All pull requests

Pull requests

• Sanger - fix withLabel to refer to correct GPU process label

  #1181·prototaxites opened Oct 2, 2026Contributor·

  ·
  1

• OIST: refresh profile (Slurm throttling, job arrays, sub-profiles)

  #1180·charles-plessy opened Oct 1, 2026Contributor·6 of 7 tasks·

  ·
  2

• Refactor Alphafold and Boltz configurations

  #1179·SarahBeecroft opened Sep 10, 2026Contributor·

  ·

• purdue_gautschi & purdue_negishi: add apptainer libraryDir for shared…

  #1176·aseetharam opened Sep 8, 2026Contributor·3 tasks done·

  ·

• Refactor/update csiro petrichor queue

  #1167·cmacphillamy opened Aug 14, 2026·3 of 8 tasks·

  ·

• Remove deprecated pipeline-specific specific Maestro config

  #1161·jfy133 opened Aug 10, 2026Member·

  ·
  2

• Add memory configuration for DEEPTOOLS_PLOTHEATMAP_GENE

  #1156·ahepperla opened Aug 5, 2026Contributor·8 tasks·

  ·

• Fix apptainer access to node-local scratch

  #1153·manascripts opened Jul 29, 2026Member·

  ·
  1

• [WIP] nf-co2footprint activation on CFC cluster

  #1132·JosuaCarl opened Jun 17, 2026Contributor·3 tasks done·

  ·
  1

  

• FEAT: Refactor CI to only test modified files

  #1123·maxulysse opened May 29, 2026Member·

  ·
  6

• Document squashfs module requirement for Apptainer

  #1118·FredDroest opened May 22, 2026·8 tasks·

  ·
  1

• Fix the --mem request not allowed error when running on Trillium nodes

  #1108·joshuayangca opened May 12, 2026·

  ·
  4

• Increase resources for ipop-up cluster

  #1107·hennion opened May 6, 2026Contributor·8 tasks·

  ·
  1

• FEAT: UPPMAX Claim profile responsibility + add rnaseq config

  #1097·maxulysse opened Apr 23, 2026Member·8 tasks·

  ·
  7

• FIX: Strict syntax for eager/maestro

  #1084·maxulysse opened Apr 7, 2026Member·8 tasks·

  ·
  1

• FIX: Strict syntax for eager/eva

  #1083·maxulysse opened Apr 7, 2026Member·8 tasks·

  ·
  9

• FIX: Strict syntax for proteinfold/nci_gadi

  #1082·maxulysse opened Apr 7, 2026Member·8 tasks·

  ·
  1

• FIX: Strict syntax for sarek/icr_davros

  #1081·maxulysse opened Apr 7, 2026Member·8 tasks·

  ·
  1

• Add extra test for linting

  #1056·maxulysse opened Mar 25, 2026Member·8 tasks·

  ·
  2

• WIP : Fix strict syntax errors in configs repo (meta PR)

  #1019·maxulysse opened Feb 24, 2026Member·8 tasks·

  ·
  13

• Bump singularity and java module versions

  #1014·RoganGrant opened Feb 13, 2026Member·

  ·
  1

• test default nextflow and (without failing) latest-everything

  #1012·mashehu opened Feb 13, 2026Contributor·

  ·
  2

• Increase max memory and CPUs in mjolnir_globe.config

  #1010·bentpetersendk opened Feb 12, 2026Contributor·1 of 8 tasks·

  ·
  1

• Add bactmap_update_global_use.config file

  #995·iamamofa opened Dec 16, 2025·8 tasks·

  ·
  3

• Revise documentation for Imperial CX3 HPC Configuration

  #991·davidhemp opened Dec 11, 2025·8 tasks·

  ·
  4