Exploration with contrastive algorithms

R package for performing kernel-based FS-boost fine-mapping method with applications to genetic data

Gene Set + S2G strategy annotations analyzed for disease architecture

A consensus variant-to-function scoring algorithm (ENCODE, IGVF)

Benchmarking different ENCODE CRE-gene links based on disease heritability

Clustering and Visualization of species abundance patterns in ecological data

Exploration, clustering, visualization and classification of DNA damage patterns

A R package for Grade of Membership model and Visualization of counts data:

Grade of Membership clustering in methylation data

A fast scalable method for performing Non-negative Matrix Factorization for Biological data

GxT is a software interface for computing gene trait association score

Repository for performing DeepBoost, S2G linking and Imperio models linking deep learning models with complex traits

genomic sequence -> CNN -> annotation

A repository for the analysis in the Robocov paper. Dey and Mazumder 2020 bioRxiv

Sparse and Robust estimation of covariance, correlation and precision matrices when data has missing entries

single cell + disease

R package for adaptive correlation and covariance matrix shrinkage.

Workflow for follow up work on CorShrink

R package for Enrichment Depletion Logos (EDLogos) and String Logos

A webpage for the CorShrink R package

Workflow and webpage for the Logolas R package

Repository for testing the methClust R package

Word2vec + Statistical analysis of Black Magazines during civil rights era

An R package for Semi-supervised Topic models

Bird presence absence data analysis around Wallacea

Personal webpage

A repository containing the analysis related to Dirichlet Adaptive Shrinkage (dash)

R package for Dirichlet adaptive shrinkage and smoothing

A Brief History of Logo plots