University of North Dakota Hur Laboratory
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PPI-GPT-BERT
PPI-GPT-BERT PublicApplication of Generative Pretrained Transformer (GPT) on identifying protein-protein interactions in biomedical text
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pxpn_neuropathy
pxpn_neuropathy PublicForked from guillermodeandajauregui/pxpn_neuropathy
Scripts for the generation and analysis of Pathway Crosstalk Perturbation Networks in a murine model of diabetic neuropathy
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Vaccine-Adjuvant-LLM
Vaccine-Adjuvant-LLM PublicVaccine Adjuvant identification from biomedical literature using LLM
Repositories
- AllOfUs_DPN Public
A project to identify relevant clinical factors associated with diabetic peripheral neuropathy using the All of Us Research data.
- Nested-NER-BERT Public
- DPN_DREX_HumanSpatial Public
- Vignet Public
Vignet — Vaccine-focused Integrative Gene Network from PubMed literature mining using the Vaccine Ontology (VO). Sister project to Ignet.
- Ignet Public
Integrative Gene Network — literature-mined gene interaction database from 848K+ PubMed abstracts with BioBERT scoring, REST API, and MCP endpoint
- richCluster Public
richCluster is a fast C++ agglomerative hierarchical clustering algorithm packaged into easily callable R functions, designed to help cluster biological 'terms' based on how similarly the genes are expressed in their activation.
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- COVID19VAE Public
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