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1. imagemorphflow imagemorphflow Public

   Python package for image-based profiling workflows, integrating CellProfiler, optional deep learning segmentation, and morphological feature processing.

   Python 1 1

2. broadinstitute/scripts_notebooks_fossa broadinstitute/scripts_notebooks_fossa Public

   Scripts used inside notebooks for @fefossa projects. Mainly to generate PhD results.

   Jupyter Notebook 3 10

3. ciminilab/2023_Garcia-Fossa_Cruz_CurrentProtocols ciminilab/2023_Garcia-Fossa_Cruz_CurrentProtocols Public

   Scripts for Current Protocols paper

   Jupyter Notebook 6 2

4. DeepProfiler DeepProfiler Public

   Forked from cytomining/DeepProfiler

   Morphological profiling using deep learning

   Python

5. CellProfiler/CellProfiler-plugins CellProfiler/CellProfiler-plugins Public

   Community-contributed and experimental CellProfiler modules.

   Python 77 75

6. 2023_CourseImageAnalysis_NanoCell 2023_CourseImageAnalysis_NanoCell Public

   Course about image analysis with materials in English and videos in Portuguese.

   1 1