Fix alpha typo - #1074

* start ndprocessors

* basic timeseries

* add __init__

* heatmap for timeseries works!

* NDPositions, basics work, reorganize, increase default scatter size

* black

* NDPositions working with multi-dim stack of lines, need to test window funcs

* scatter collection

* progress, need to change to other branch so committing

* better

* interpolation for heatmap

* better place for check

* window functions working on n_datapoints dim

* p dim window funcs working for single and multiple dims I think

* black

* index_mappings is working I think, lightly tested on p dim

* remove nd_timeseries since nd_positions is sufficient

* auto-replace buffers (#974)

* remove isolated_buffer

* remove isolated_buffer from mixin

* basics works for positions data

* replaceable buffers for all positions related features

* image data buffer can change

* resizeable buffers for volume

* black

* buffer resize condition checked only if new value is an array

* gc for buffer managers

* uniform colors WIP

* switching color modes works!

* typo

* balck

* update tests for color_mode

* update examples

* backend tests passing

* default for all uniforms is True

* update examples

* forgot

* update test

* example tests passing

* dereferencing test and fixes

* simplify texture array tests a bit

* image replace buffer tests pass yay

* forgot a file

* comments, check image graphic

* add image reshaping example

* add buffer replace imgui thing for manual testing

* black

* dont call wgpu_obj.destroy(), seems to work and clear VRAM with normal dereferencing

* slower changes

* update

* update example

* fixes and tweaks for test

* remove unecessary stuff

* update

* docstrings

* fix example

* update example

* update example

* update docs

* some basic OOC working

* max num of dipslay datapoints

* scatter stack, not tested

* progress

* scatter collection updates

* tootip handlers for ndpositions

* refactoring, general NDPP_Pandas processor for any dataframe data

* separate array logic and graphic logic in `ImageWidget` (#868)

* start separating iw plotting and array logic

* some more basics down

* comment

* collapse into just having a window function, no frame_function

* progress

* placeholder for computing histogram

* formatting

* remove spaghetti

* more progress

* basics working :D

* black

* most of the basics work in iw

* fix

* progress

* progress but still broken

* flippin display dims works

* camera scale must be positive for MIP rendering

* a very difficult to encounter iterator bug!

* patch iterator caveats

* mostly worksgit status

* add ArrayProtocol

* rename

* fixes

* set camera orthogonal to xy plane when going from 3d -> 2d

* naming, cleaning

* cleanup, correct way to push and pop dims

* quality of life improvements

* new histogram lut tool

* new hlut tool

* imagewidget rgb toggle works

* more progress

* support rgb(a) image volumes

* ImageGraphic cleanup

* cleanup, docs

* fix

* updates

* new per-data array properties work

* black formatting

* fixes and other things

* typing tweaks

* better iterator, fix bugs

* fixes

* show tooltips in right clck menu

* ignore nans and inf for histogram

* histogram of zeros

* docstrings

* fix imgui pixels

* iw indices event handlers only get a tuple of the indices

* bugfix

* fix cmap setter

* spatial_func better name

* bugfix

* hist specify quantile

* fix typos (#991)

* fix typos

* add rendercanvas to intersphinx_mapping

* nd-iw backup

* correct ImageGraphic w.r.t. ndw

* last fixes in ndi

* update

* basic minimal ndw orchestration working

* implement auto-x for timeseries

* bugfix update worldobject -> graphic map for image tiles

* bugfix linear selector set limits

* linear selector for timeseries

* return full data if display_window is Noen

* arrow key to step indices

* imgui separator

* fix and ui stuff

* both auto x range modes working

* progress

* moving stuff

* much much better organization of things

* GlobalIndexVector working with ndpostions and ndimage

* examples

* progress

* do not reset vmin vmax when replacing Image buffer

* WIP migrate to xarray

* window funcs in NDProcessor class using xarray, WIP, not tested

* typo

* basic single index slicing working with xarray

* window funcs working for NDPositions and NDPP_Pands

* display_window window funcs working for NDPositions

* imgui stuff

* finish migrate NDImage to xarray, basics work

* NDImage working mostly, behavior viz is back

* better flipping logic

* update examples

* more progress

* update example

* histogram working for images

* NDProcessor property aliases

* more aliasing

* fix

* update example

* fix

* ui

* cleanup old iw-array, imports, add deprecation warning on old iw

* add ndwidget section to deps with xarray

* nice repr for NDProcessor

* imgui right click menu for ndgraphics

* better

* controller options separate window

* update imgui

* fix

* fix compute histogram

* other features WIP

* basics of other features works with ScatterStack for colors, markers, sizes, need to keep testing

* require min pygfx v0.16.0 due to gc hash fix necessary for NDWidget

* fix PlotArea.y_range

* fix to create isolated buffer for colors when buffer replaced

* np.empty

* cmap_transform_each WIP

* progress

* fix

* replace graphic when data changed, tweak index_mappings

* Update installation docs (#1013)

* add simplejpeg to notebook deps

* Update guide.rst

* Update guide.rst

* Update README.md

* cmap lib handles image colormaps now

* multi-windows ndwidget, maintain features like cmap when switching graphics

* progress

* lighting objects only when a mesh is added

* fix

* update axes only when camera or view changes

* clean heatmap func

* stupid print

* docstrings, comments

* remove unused attr, comments

* remove print

* add NDGraphic.pause, expose histogram widget

* ndg pause in imgui

* add helper function to convert heatmap timeseries to postional data shape

* index wans't calling handlers

* remove

* allow image types other than float32 (#1027)

* Includes code for doing batched transforms in both directions (#1025)

* Includes code for doing batched transforms in both directions

* Streamlined parsing logic and updated docstrings for model to world code

* Fixes inconsistent error messages

* More streamlined type checking

* Gets rid of checks and uses np asarray

* Some more aesthetic updates to the syntax

* Update fastplotlib/graphics/_base.py

---------

Co-authored-by: Kushal Kolar <kushalkolar@gmail.com>

* async NDProcessor (#1026)

* async NDProcessor established, NOT TESTED

* ASYNC NDPROC IS WORKING :D :D CELEBRATE

* comments

* type annot

* fix

* fix

* polish async integration, cuda also integrated

* no longer using xarray, allow simpler ArrayProtocol

* comments

* comments

* docs

* forgot to set back to False

* remove xarray from pyproject.toml

* throttling

* Adds nd vector graphic (#1034)

* Includes nd vector code that works

* Faster position assignment, no more for loop

* Batched computations for vector set function

* Formatting updates

* Includes improved annotations and changes ordering of the data slice from the vectors graphic

* Some further improvements to the pylinalg code

* Fixes remaining formatting and naming issues

* Apply suggestions from code review

Co-authored-by: Kushal Kolar <kushalkolar@gmail.com>

---------

Co-authored-by: Kushal Kolar <kushalkolar@gmail.com>

* Adds kwargs so user can customize vector field estimates (#1036)

* Adds kwargs so user can customize vector field estimates

* Does the kwarg organization the way ndpositions does

* fixes graphic constructor

* implement yuv and other colorspaces and "bufferless" `TextureArray` (#1033)

* implement yuv and 'bufferless' TextureArraY

* unbuffered and yuv420 works

* warning on tooltip

* NDImage always uses unbuffered, support colorspaces in NDIMage

* update docstrings

* by default disable AA and set pixel_scale=1.0 for performance

* unpacked yuv support

* independent graphics and texture features for rgb and yuv

* docstrings

* docstrings

* import order

* yuv graphic working nicely

* add enum to top level namespace

* update script to produce add graphics mixin

* add yuv example

* update ndimage with yuv stuff

* fixes

* yuv video working well with NDWidget

* cleanup

* `SelectionVector`, `HighlightSelector`, `VisibilitySelector`, `SelectorCollection` (#1038)

* start selection vector stuff, protocol

* highlight selector WIP

* fixes

* progress

* lut repeat

* highlight and visibility selectors working, selection vector working

* PlotArea checks for SelectorProtocol instead, move some stuff around

* selector collection, not yet tested

* cleanup

* bugfix for linear selector limits

* add example

* better append, remove

* cleanup

* basically rewrote entire ImageHighlightSelector

* black

* happy with iamge selectors

* toy multi session example

* correct mapping stuff

* better scalar/vector handling

* comments

* compute capabilities (#1040)

* allow setting texture usage directly

* ImageHighlightSelector, VisibilitySelector and ImageVisibilitySelector can handle 'None' as placeholders in the selection

* fix example

* comments

* better axes padding for tick labels, settable axis label (#1049)

* better axes padding for tick labels, settable axis label

* cleanup

* move axes to tools

* update

* move stuff around

* update docs

* update

* update

* use fully fledged async, `NDPositions` improvements (#1050)

* use fully fledged async

* better throttling

* torch.Tensor.tranpose() doesn't like tuples

* we need time-based throttling, but it can be gentler

* improvements

* improvements

* fixes

* x_range fix

* fix NDPandasProcessor

* fix

* HighlightSelector fix to append None

* cleanup better

* know ndg current dipslayed indices

* improve example

* docstrings, cleanup

* remove __array_ufunc__ from required attrs

* do not require __array__() to be implemented for ndwidget

* auto ref ranges

* fix imgui

* tear out NDTimeseries from NDPositions

* imgui refactor (#1066)

* start imgui window refactor

* update w.r.t. imgui changes

* imgui hlut colorbar stuff

* better focus logic

* imgui popup stuff

* update docs

* update examples, remove HistogramLUTTool

* update examples

* imgui menubar example

* update docs, tweaks

* docs

* doc fixes

* docs

* fix

* right click anywhere in colorbar/hlut window

* inf line, dashing, thin bool (#1064)

* Create partial_camera_linking.py (#1020)

* inf line, dashing, thin bool

* tests

* new screenshots

* Selection vector improve (#1061)

* Full selection vector implementation

* Includes some documentation at top of SelectionVector

* Minor typing fix in linear selector selection setter

* First working version with selection vector

* Reworks the logic for adding selectors, improves some documentation, adds partial instead of lambda functions, improves typing in highlight selector

* Fixes casting bug in the integer version of the code

* Update fastplotlib/graphics/selectors/_selection_vector.py

* Update fastplotlib/graphics/selectors/_selection_vector.py

* Removes unused init time parameter and also updates the typing on the default inverse mapping function to always return an integer

* Adds a nonneg check in selection vector selection setter

* Adds nonneg test for inverse handler

---------

Co-authored-by: Kushal Kolar <kushalkolar@gmail.com>

* Includes basic np dlpack function that is tested to work across jax a… (#1067)

* Includes basic np dlpack function that is tested to work across jax and torch

* delays dimension permutation for all code that uses ndprocessor

* Eliminates old comment

* Updates the numpy dep to be the min version that allows dlpack conversion across devices

* Includes code to update spatial dims indices whenever spatial dims is changed

* Moves the spatial dims indices computation to the read only property in the base class, updates docs, uses public property in the ndprocessor subclasses

* Filters for None values in the inv handler (#1073)

* bugfix after last PR

* alpha is material.opacity (#1074)

* clamp vmin, vmax in colorbar histogram LUT tool (#1076)

* Flat graphic features 2nd edition (#1072)

* refactor cmap and cmap_transform for positional graphics

* color mode stuff

* WIP

* more WIP

* better add_graphic autogen

* more progress

* mostly done refactoring positions graphics cmap stuff

* forgot to update mixin

* cmap_transform tweaks

* wip, JaggedArray

* mostly works, writing tests

* remove a print

* image collection examples

* fix

* feature inheritance in PositionsGraphic and cmap_range

* cmap handling

* cmap tweaks

* remove parse_cmap_values, rely on cmap lib

* fix example, remove unused line of code

* Image just uses cmap lib now too

* delete_ndgraphic()

* ndtimeseries cmap example

* steps for stacks

* ndtimeseries sets stack steps

* docstrings

* docstrings

* comments

* renames

* docstring

* fixes

* update tests/test_colors_buffer_manager.py

* update test_markers_buffer_manager.py

* update plot_helpers test

* update test_point_rotations_buffer_manager.py

* update test_positions_graphics.py

* update another test

* more tests

* update yet more tests

* remove unused

* infline tests

* collections tests

* updating examples, wip

* more examples updates

* more examples updates

* more example updates

* more example updates

* example and docstring

* docstring

* remove complex line collection slicing example, stick with real usecases

* better line stack example

* update example

* update example

* update link

* update more examples

* examples and fixes

* fix

* more fixes

* fix

* updates

* Fix

* update docs

* docs

* add image collection to docs conf.py

* update docs

* Ndw rename consistency (#1078)

* rename for consistency

* more consistency

* more

* final renames

* fix

* cursor fix

* missed renames

* pandas fix

* restore ImageWidget, auto-collapse NDWidget sliders UI if no slider dims and no appended UIs

* imagewidget stuff

* ImageVolumeGraphic args fix

* NDWSubplot dims check only for array-like

* collapsed property on ImaguiWindoW

* update iw examples

* colorbar fix

* lingering rename

* fix

* type

* clim_quantile for NDImage, other fixes

* public 'max_display_datapoints' property

* dw setter

* imgui right click for NDGraphics

* axes label tweaks

* remove unused zarr placeholder

* fix docstring

* config system (#1080)

* basic scaffold done

* inheritance

* done

* config works!

* config on graphics

* axes config

* full config implementation basically works

* fix

* mixins call Graphic construtors with kwargs nothing is positional

* print

* config presets

* comments, docstrings

* docstrings

* remove ConfigValue

* comments

* much better add graphics mixin using descriptors, examples, fix a test

* anotehr example

* GlobalConfig.to_dict()

* docs

* reset to default config after each screenshot test

* add_<graphics>() stub generator, fix maintain_aspect logic w.r.t. config stuff

* change so maintain_aspect can be tested better

* docstring

* reset config after running each docs gallery examle

* better example

* docs

* remove randon shit

* ndw stuff is all top level importable, move types to utils

* fix black

* fix import

* matplotlib migration docs

* wording

* uncommnet iw for docs conf.py

* update example

* update

* update

* temp skip nds_extras in docs

* temp comment out vis selector example

* fix usage args

* just make usage a kwarg to ImageGraphic

* update api docs stuff

* update example

* fix docstrings etc.

* type annots

* ndw import stuff

* docs for nds extras

* docs reqs

* nds extras

* ReferenceIndices.pop_dims

* graphics stubs

* fix for None data, remove delete_ndgraphic() for now

* collections stubs

* ndw docs, WIP

* ndw guide

* types fix

* better axes ticks text outline, WIP on ndwidget playback in docs, stubs

* ndw animate in docs works

* fix display_dims bug

* remove tranpose from ArrayProtocol

* bugfix, spatial func stuff

* ndw tests

* black

* more balck

* add example

* fixes

* fix

* update

* other CI fiel

* skip ndw and imgui test if not present

* garbage collection of graphics in imgui popup

* temp imgui ping

* fix

* update CI

* Update screenshots.yml

* update screenshots

* fix docstrings

* update test thresholds, remove line dashing from screenshot tests

* update api docs

* another example

* skip testing an example

* higher RMSE threshold on mac because I am so done with this shit

* Update ci.yml

* Update ci-pygfx-release.yml

---------

Co-authored-by: Amol Pasarkar <amolpasarkar@gmail.com>
Co-authored-by: Flynn <75346097+FlynnOConnell@users.noreply.github.com>
Co-authored-by: Caitlin Lewis <caitlin9165@gmail.com>