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PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
A repository that stores all the MCP servers for creating biological mechanistic models. It includes server for NeKo, MaBoSS, PhysiCell/PhysiBoSS.
A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.
Python phylogeny tracker for in silico evolution experiments
The goal of this package is to perform uncertainty quantification across the entire input space of PhysiCell models (including parameters, initial conditions, and rules) using either a single deskt…
CytokineLink: a map of cytokine communication for inflammatory and infectious diseases
Registry for scverse ecosystem packages
A BioIO reader plugin for reading Tiff files in the OME format.
Package to call Python functions from the Julia language
https://www.sc-best-practices.org
Automaticly generate your styled QR code in your web app.
Unofficial QR code generator for GitHub profiles and projects
A library of free open source icons for science illustrations in biology and chemistry
PhysiGym is a tool for applying reinforcement learning to PhysiCell
Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.
Reinforcement Learning repo for PhysiCell adaptive therapy
Image reading, metadata management, and image writing for Microscopy images in Python
PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and visualize results. To contribute, fork and make PRs to the deve…
tellurium anemony implementation form Jan Krumsiek's 2011 publiaction
Challenge 10: 3D Volume Visualization through Neuroglancer
For scientific volumetric data visualization in Blender.
Support for for students (Python)