This repository contains data on Coronavirus Disease 2019 (COVID-19) in New York City (NYC), from the NYC Department of Health and Mental Hygiene.

Tools for diffing and merging of Jupyter notebooks.

Modin: Scale your Pandas workflows by changing a single line of code

A statistical library designed to fill the void in Python's time series analysis capabilities, including the equivalent of R's auto.arima function.

⚡ A Fast, Extensible Progress Bar for Python and CLI

Example usage of scikit-hts

Open source time series library for Python

Code for modelling estimated deaths and cases for COVID19.

Vanilla regression methods for microbiome differential abundance analysis

Robust Aitchison PCA from sparse count data

Stray has been renamed fido, development continues at jsilve24/fido

Live training loss plot in Jupyter Notebook for Keras, PyTorch and others

A curated list of awesome deep learning applications in the field of computational biology

A list of deep learning implementations in biology

Pareto smoothed importance sampling (PSIS) and PSIS leave-one-out cross-validation for Python and Matlab/Octave

A collection of RStudio style cheatsheets for the Stan ecosystem

American Gut open-access data and IPython notebooks

File format specifications, Presentation materials and other information

Code from the "Tensorflow and deep learning - without a PhD, Part 2" session on Recurrent Neural Networks.

Artist Explorer is a music discovery tool to to explore artists and music by browsing artists through a relationship tree

A probabilistic programming language in TensorFlow. Deep generative models, variational inference.

Python framework for Systems Biology modeling

Python utilities for Cytoscape and Cytoscape.js

Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.

Bayesian Modeling using Stan in R (May/June 2016)

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…

Fisher exact test for mxn contingency table in python

Original Apollo 11 Guidance Computer (AGC) source code for the command and lunar modules.