Deep learning intra-modality image registration arhitecture fulfilling strict symmetry properties

Run marked pytest tests in grouped subprocesses (cross-platform).

A library to handle automated deprecations

Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI

🩻 Whole-body CT segmentation made simple: 22,022 scans, 167 structures, one open solution.

An accurate, adaptable, and automated AI pipeline called non-human primates Brain Extraction and Segmentation Toolbox (nBEST) for processing NHPs from multi-species, multi-site, and multi-developme…

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

Readable Conditional Denoising Diffusion

Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

MRISegmentator

Seamless operability between C++11 and Python

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

Baseline methods, training scripts, and pretrained models for LUMIR challenge at Learn2Reg 2024

🤗 Transformers: the model-definition framework for state-of-the-art machine learning models in text, vision, audio, and multimodal models, for both inference and training.

Slicer Extension for uniGradICON: A Foundation Model for Medical Image Registration

Install PyTorch distributions with computation backend auto-detection

Contrast-agnostic segmentation of MRI scans

High-order spline interpolation in PyTorch

Automatic landmark identification in CBCT scans

nanobind: tiny and efficient C++/Python bindings

This is a segmentation pipeline to automatically, and robustly, segment the whole spine in T2w sagittal images.

Pointregistation for Nifftys

UKBB MRI semantic segmentation for Abdominal Dixon and other modalities

Measure the SMPL body model

Fit an SMPL body model to a scan

Release for the Siggraph Asia 2023 SKEL paper "From Skin to Skeleton: Towards Biomechanically Accurate 3D Digital Humans".