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Give user option to save on original grid #304

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Merged
sbillinge merged 6 commits into from
Jun 1, 2026
Merged

Give user option to save on original grid #304

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1977c00
Allow original grid saving
Sparks29032 Jun 1, 2026
d1129d7
Add uncertainties for main parameters. (#299)
Sparks29032 Jun 1, 2026
2665bd5
Rebasing
Sparks29032 Jun 1, 2026
eb18888
Remove duplicated test
Sparks29032 Jun 1, 2026
76f61f5
Merge branch 'main' into choose-grid
Sparks29032 Jun 1, 2026
3e05e40
Indent
Sparks29032 Jun 1, 2026
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Remove duplicated test
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@Sparks29032
Sparks29032 committed Jun 1, 2026
commit eb18888f3bbdd18e4c9e04110d663f9a736e0ada
72 changes: 0 additions & 72 deletions tests/test_morphio.py
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Original file line number Diff line number Diff line change
Expand Up @@ -329,78 +329,6 @@ def test_grid_selection(self, setup, tmp_path):
expected = filter(ignore_path, tf)
are_files_same(actual, expected)

def test_grid_selection(self, setup, tmp_path):
morph_file = self.testfiles[0]

# Save on default grid
tmp_default = tmp_path.joinpath("default")
tmp_default_name = tmp_default.resolve().as_posix()

opts, pargs = self.parser.parse_args(
[
"--multiple-morphs",
"-s",
tmp_default_name,
"-n",
"--save-names-file",
tssf,
"--xmax",
"35",
]
)

pargs = [testsequence_dir, morph_file]
multiple_morphs(self.parser, opts, pargs, stdout_flag=False)

tmp_default_morphs = tmp_default.joinpath("Morphs")

# Check the saved files are the same for verbose
common = []
for item in tmp_default_morphs.glob("**/*.*"):
if item.is_file():
common.append(item.relative_to(tmp_default_morphs).as_posix())
for file in common:
with open(tmp_default_morphs.joinpath(file)) as gf:
with open(test_saving_grid_default.joinpath(file)) as tf:
actual = filter(ignore_path, gf)
expected = filter(ignore_path, tf)
are_files_same(actual, expected)

# Save on original grid
tmp_original = tmp_path.joinpath("original")
tmp_original_name = tmp_original.resolve().as_posix()

opts, pargs = self.parser.parse_args(
[
"--multiple-morphs",
"-s",
tmp_original_name,
"-n",
"--save-names-file",
tssf,
"--xmax",
"35",
"-o",
]
)

pargs = [testsequence_dir, morph_file]
multiple_morphs(self.parser, opts, pargs, stdout_flag=False)

tmp_original_morphs = tmp_default.joinpath("Morphs")

# Check the saved files are the same for verbose
common = []
for item in tmp_original_morphs.glob("**/*.*"):
if item.is_file():
common.append(item.relative_to(tmp_original_morphs).as_posix())
for file in common:
with open(tmp_original_morphs.joinpath(file)) as gf:
with open(test_saving_grid_original.joinpath(file)) as tf:
actual = filter(ignore_path, gf)
expected = filter(ignore_path, tf)
are_files_same(actual, expected)

# Similar format as test_morph_outputs
def test_morph_diff_outputs(self, setup, tmp_path):
morph_file = self.testfiles[0]
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