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docs: add public pages for the deepnote publish and sync CLI commands - #510

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@jamesbhobbs

@jamesbhobbs jamesbhobbs commented Sep 1, 2026 •

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Stacked on #508 — base is worktree-sync-publish-coordination, so the diff here is docs only. Rebase onto main once #508 merges.

Why

Neither deepnote publish nor deepnote sync had public documentation. deepnote sync is also easy to confuse with the in-product Deepnote file sync feature: the names collide, and nothing on the existing page distinguished them.

What's here

docs/deepnote-cli-publish.md — deploying a build directory to a project. Covers authentication and token safety, finding a project ID (matching the URL convention already documented in data-apps.md), the _deepnote_static target and --path with its percent-encoded URLs, --api-access and why it is off by default, --prune, the local-validation-then-remote-mutation ordering, exit codes, and the canonical URL the server returns.

docs/deepnote-cli-sync.md — mirroring a workspace locally. Opens with the naming distinction, then covers the directory layout and .deepnote-sync.json, both sync directions and lost-update protection, --on-conflict including the non-TTY behavior, --all-files and the 100 MiB cap, the deletion rules in both directions, the safety rails (including why pruning is refused on a workspace mismatch), automation, and exit codes. Ends with a table for choosing between file sync, CLI sync, and publish.

docs/deepnote-file-sync.md — a callout at the top distinguishing the in-product Git-linked feature from the CLI command, plus a Related section. Surgical: the existing content is unchanged.

Both new pages cross-link each other and note that the two --prune flags share a name and point in opposite directions — remote for publish, local for sync.

One deviation from the brief, flagged

The brief asked to document the ownership rule as "sync --all-files ignores _deepnote_static/** after the conflict fix." That describes the exclusion approach (Option A) that was rejected in favour of "both work for both", and it is not what #508 does. Documenting it would have been wrong on the day it merged.

What the pages document instead, matching #508:

  • deepnote publish writes the static root. It is the deploy command and the only one that should author those files; its source of truth is the local build directory.
  • deepnote sync mirrors it and never silently overwrites it. The per-file divergence check applies there like anywhere else, so a site republished since the last sync is surfaced as a conflict rather than reverted to an older local copy.
  • A publish inside a synced workspace keeps the mirror in step, so the next sync does not see the deploy as drift.

Same practical guidance — publish owns those files, sync will not clobber them — expressed as coordination rather than exclusion. Worth a look to confirm the framing reads the way you want before this leaves draft.

Deliberately untouched

  • docs/deepnote-mcp.md — waiting on the released manifest.
  • docs/creating-apps.md, docs/streamlit.md, and also docs/scheduling.md, docs/export-pdf.md, docs/export-project.md — the last three are in docs: refresh publishing and app delivery guidance #491's diff, so they are excluded too.
  • No tool counts or unreleased capabilities. No plan-gating claims, since I could not verify them from the repo.

Checks

pnpm prettier:check and pnpm spell-check clean. Every /docs/<slug> link in the three files verified against an existing page.

🤖 Generated with Claude Code

Summary by CodeRabbit

  • Documentation
    • Added comprehensive guidance for using deepnote publish, including authentication, project permissions, API access, options, failure behavior, and exit codes.
    • Added documentation for deepnote sync, covering workspace mirroring, bidirectional synchronization, conflicts, deletions, automation, and safety controls.
    • Clarified the difference between in-product file sync and the deepnote sync CLI command.
    • Added related resources for publishing, synchronization, file formats, and local setup.

jamesbhobbs and others added 3 commits September 1, 2026 09:41
`deepnote publish` deploys into `_deepnote_static/**`, which is a subtree of
the project file store `deepnote sync --all-files` mirrors. Neither command
knew about the other, so they drifted: every publish made the whole static
subtree look changed to sync (re-downloading it on the next run), a stale
local mirror could be pushed back over a live site with no staleness check,
and `publish --prune` left local ghosts that a later edit would resurrect.

Resolved by coordination rather than by dividing the namespace, so both
commands keep working on the same paths:

- Sync gains per-file lost-update protection on push. `uploadProjectFiles`
  never fetched the inventory at all; it now checks every candidate against
  it and routes a file that moved since the manifest baseline through the
  existing `--on-conflict` override-or-skip choice. A pending replacement is
  exempt — that missing cloud copy is sync's own unfinished delete. This also
  fixes the same silent overwrite for ordinary working files edited in the
  Deepnote app.
- Publish updates the sync mirror when the published directory sits inside a
  synced workspace: it writes each file into the project's `.files/` mirror
  and records size, hash, and server `updatedAt`, exactly as a sync download
  would. `--prune` drops pruned paths from both. `--sync-root`/`--no-sync-root`
  control discovery.
- Publish stops before mutating anything if a path it would write has moved on
  in Deepnote since that workspace last synced, since the mirror holds no copy
  of that content; `--force` overrides. Its check is deliberately narrower
  than sync's: publish is a deploy where the local build is authoritative, so
  a path with no baseline is not flagged.
- `PROJECT_STATIC_ROOT` moves to `@deepnote/cloud` so every writer agrees on
  where the boundary is.

The mirror is only updated when the tracked project directory already exists —
creating it would make the next sync read the project as "all notebooks deleted
locally" and push that. Mirror failures are warnings, not errors: the deploy
succeeded, and a stale manifest is safe because the next sync asks.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Neither command had public documentation, and "deepnote sync" was easy to
confuse with the in-product "Deepnote file sync" feature since the names
collide and nothing distinguished them.

- docs/deepnote-cli-publish.md — deploying a build directory to a project:
  authentication and token safety, finding a project ID, the _deepnote_static
  target and --path, --api-access and why it is off by default, --prune,
  failure ordering, exit codes, and the canonical URL the server returns.
- docs/deepnote-cli-sync.md — mirroring a workspace locally: the directory
  layout and manifest, both sync directions, conflict handling, --all-files,
  the deletion rules, safety rails, and automation.
- docs/deepnote-file-sync.md — a callout up top distinguishing the in-product
  Git-linked feature from the CLI command, plus cross-links.

Both new pages document ownership of the static site directory: publish is
the write path, and sync mirrors it without ever silently overwriting it,
surfacing a republished site as a conflict instead. A publish inside a synced
workspace keeps that workspace's mirror in step.

Deliberately untouched: docs/deepnote-mcp.md (waiting on the released
manifest), and docs/creating-apps.md, docs/streamlit.md, docs/scheduling.md,
docs/export-pdf.md and docs/export-project.md (PR #491 and the app-reference
work). No tool counts or unreleased capabilities are described.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 89.07%. Comparing base (8cd8832) to head (0e3076c).

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #510   +/-   ##
=======================================
  Coverage   89.07%   89.07%           
=======================================
  Files         201      201           
  Lines       11521    11521           
  Branches     3239     3239           
=======================================
  Hits        10262    10262           
  Misses       1257     1257           
  Partials        2        2           

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@jamesbhobbs
jamesbhobbs marked this pull request as ready for review September 1, 2026 17:59
@jamesbhobbs
jamesbhobbs requested a review from a team as a code owner September 1, 2026 17:59
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📝 Walkthrough

Walkthrough

Added documentation for deepnote publish and deepnote sync. The documentation covers authentication, access controls, local layouts, synchronization, conflicts, pruning, deletion, safety rules, automation, exit codes, static-site ownership, command interactions, and related resources.

Priority: ⬇️ Low

Estimated code review effort: 1 (Trivial) | ~5 minutes

Merge Risk: ⚪ Minimal · up to 0e307

This change adds CLI documentation and cross-links without an identified current-head merge risk.

Suggested reviewers: tkislan

🚥 Pre-merge checks | ✅ 6
✅ Passed checks (6 passed)
Check name Status Explanation
Description Check ✅ Passed Check skipped - CodeRabbit’s high-level summary is enabled.
Title check ✅ Passed The title clearly and concisely describes the main change: adding public documentation for the Deepnote publish and sync CLI commands.
Docstring Coverage ✅ Passed No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check. Docstring coverage is scoped to functions touched by this diff. Analyzed 0 functions across 0…
Linked Issues check ✅ Passed Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check ✅ Passed Check skipped because no linked issues were found for this pull request.
Updates Docs ✅ Passed The OSS repository contains documentation for the implemented deepnote publish and deepnote sync commands, plus a distinction on deepnote-file-sync.md. The pages cover the relevant options and c…

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Actionable comments posted: 1

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Inline comments:
In `@docs/deepnote-cli-publish.md`:
- Around line 47-48: Update the token guidance in the publish docs to say that
DEEPNOTE_TOKEN keeps the secret out of CLI arguments, and remove the claim that
it avoids shell-history or process-list exposure. Keep the wording anchored to
the existing token advice and adjust only the sentence around --token versus
DEEPNOTE_TOKEN.
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Comment thread docs/deepnote-cli-publish.md Outdated
jamesbhobbs and others added 2 commits September 1, 2026 13:34
The publish page described a published site as a "public static website" and
its contents as "publicly readable". That was wrong. Static file sharing has
no anonymous tier and no link-only tier: an unauthenticated visitor is
redirected to sign-in, and the viewer must additionally be an active user with
view access to the project. A workspace-level setting and plan availability
can each disable it independently, and access is re-checked on every request.

Adds a "Who can view a published site" section stating those requirements, and
points readers at data apps — which do offer "Anyone with a link" and "Public"
access levels — when the deliverable has to reach people without Deepnote
accounts. That contrast is the thing most likely to be assumed wrongly, since
"publish" implies public hosting elsewhere.

Also notes that API access can only narrow the audience rather than widen it,
and that the printed URL must be used verbatim because each project's site is
served from its own origin.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Base automatically changed from worktree-sync-publish-coordination to main September 4, 2026 15:06
tkislan and others added 2 commits September 4, 2026 15:12
#508 landed on main as a squash (9d6fb3b), so this branch's copy of that
work conflicted with main's version of the same changes. Every conflicted
path is #508 code or skill reference — this branch adds no code of its own —
so main's squashed version wins throughout and the branch keeps only the
three docs pages it contributes.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01VWb55u5XKkyCvzvoQEUwKX
Say the environment variable keeps the token out of the command line rather than claiming it avoids shell-history and process-list exposure entirely.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
@jamesbhobbs
jamesbhobbs requested a review from tkislan September 9, 2026 10:42
@tkislan
tkislan merged commit 213ccea into main Sep 9, 2026
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@tkislan
tkislan deleted the docs/cli-publish-and-sync-pages branch September 9, 2026 10:57
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