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crentb/README.md

Cameron Renteria, PhD

Engineer | AI/ML-accelerated computational science | CI/CD and DevSecOps for research software

AI/ML-accelerated pipelines for experimental and imaging data, from synchrotron tomography and computer vision to multimodal materials measurements and finite-element design optimization, delivered as tested, secure, citable software.

agentic-bioinspired-cad: a Bouligand coupon, a woven cubic lattice and an enamel decussation lattice from its three generator families
agentic-bioinspired-cad: text-to-CAD design loop with print, FEA and fracture checks
ct-segmentation-toolkit pipeline: an image stack, optional Noise2Inverse denoising, three segmentation routes chosen by label availability, and per-pixel labels
ct-segmentation-toolkit: denoising and segmentation of CT image stacks
biomimetic-lattice-pipeline overview: synchrotron micro-CT and deep-learning PIV of enamel mapped to CAD, finite-element analysis and a printed lattice, with an Optuna optimization loop
biomimetic-lattice-pipeline: synchrotron micro-CT of enamel to printed lattices
Self-organizing-map heat maps of the chemical and mechanical properties of old human enamel, with k-means zones (Figure 6 of Renteria et al., JMBBM 2022)
som-multimodal-datareduction: self-organizing maps of multimodal materials data, from J. Mech. Behav. Biomed. Mater. 129, 105147 (2022), Special Issue: New Frontiers in Applications of Artificial Intelligence and Machine Learning in Biomaterials, Organs and Tissues

Research software

Package Scope Archive and release
ct-segmentation-toolkit Supervised (U-Net), unsupervised, and label-free (self-organizing map) segmentation of scientific image stacks, with self-supervised Noise2Inverse denoising DOI PyPI
biomimetic-lattice-pipeline Synchrotron micro-CT of tooth enamel to biomimetic lattices: parametric CAD, finite-element analysis, and closed-loop design optimization DOI PyPI
som-multimodal-datareduction Self-organizing-map reduction of multimodal materials data (nanomechanics, Raman, fracture) DOI PyPI
agentic-bioinspired-cad Fully local agentic loop from a text prompt to a certified, single-material, 3D-printable bioinspired architecture, with printability, finite-element, and phase-field fracture checks CI

Every change to these packages passes one continuous-integration gate: multi-version tests, secret scanning, static analysis, dependency and container vulnerability scans, and a signed software bill of materials. Releases publish to PyPI through Trusted Publishing and to the GitHub Container Registry as signed images with SLSA build provenance, and each version is archived on Zenodo with a DOI.

Links

Google Scholar · LinkedIn · cameronrenteria.com

Pinned Loading

  1. biomimetic-lattice-pipeline biomimetic-lattice-pipeline Public

    From synchrotron micro-CT of tooth enamel to biomimetic lattices: parametric CAD, finite-element analysis, and closed-loop design optimization.

    Python

  2. ct-segmentation-toolkit ct-segmentation-toolkit Public

    Supervised (U-Net), unsupervised (Otsu, k-means, GMM), and label-free spectral-spatial (SOM) segmentation of scientific image stacks, with self-supervised Noise2Inverse denoising.

    Python

  3. som-multimodal-datareduction som-multimodal-datareduction Public

    Self-organizing-map (SOM) reduction of multimodal materials data (nanomechanics, Raman, fracture): the packaged analysis behind Renteria et al., JMBBM 2022.

    Python

  4. CR_noise2inverse CR_noise2inverse Public

    Forked from ahendriksen/noise2inverse

    Code accompanying "Noise2Inverse: Self-supervised deep convolutional denoising for linear image reconstruction"

    Jupyter Notebook

  5. moose moose Public

    Forked from idaholab/moose

    Multiphysics Object Oriented Simulation Environment

    C++

  6. tomocupy tomocupy Public

    Forked from tomography/tomocupy

    tomography reconstruction on GPU

    Python