Fetch ocean and atmosphere data from seven sources - Copernicus Marine, FVCOM, HYCOM, NOAA CEFI, CCMP, NOAA ERDDAP and NASA OB.DAAC - and join it to observations in space and time. Shared variable …

Segment aerial line-transect marine mammal survey data (NARWC format) into effort segments and detection distances for distance sampling and density surface modeling. On-effort determination, great…

Code corresponding to regime shift analysis

Derived oceanographic covariates for species distribution models, computed from gridded ocean data. Gradients, time integration, calendar lags, eddy kinetic energy, Lyapunov exponents, distances to…

Flexible effect plots for statistical models in R: every effect curve paired with a rug of the raw data. GAMs via gratia, everything else via marginaleffects.

Finite-time Lyapunov exponent fields and Lagrangian coherent structures from gridded ocean velocities

Publication-ready maps for spatial model output: land, a stated projection, and colour scales chosen rather than defaulted. Sister package to fancyfx.

Match point observations to ocean model and satellite fields in space and time

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

Monthly habitat suitability maps for high-abundance zooplankton patches ("tau-patches"). Point-and-click Shiny app or YAML-driven R package: Copernicus covariates, derived fronts and lags, four mod…

Read and standardise North Atlantic Right Whale Consortium (NARWC) survey data

Fit and compare detection functions for line-transect distance sampling. Model sets over key functions, adjustments and covariates fitted through mrds, including the gamma key that Distance::ds() d…

Fits a dynamic (multi-season) occupancy model for cetacean vessel-survey sightings in JAGS. Config-driven data cleaning, spatial gridding, environmental covariates, and diagnostics for any species …