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1. Commits on Jan 7, 2025

   • Javadoc fix: errors in modfinder module

     josemduarte

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2. Commits on Apr 18, 2024

   • Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')

     jlerbsc

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3. Commits on Feb 26, 2024

   • fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

     jlerbsc

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4. Commits on Jun 30, 2023

   • Try-with from sonar

     josemduarte

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5. Commits on Nov 18, 2022

   • vuln-fix: Temporary File Information Disclosure

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     JLLeitschuh

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     TeamModerne

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6. Commits on Nov 7, 2021

   • Minor Miscellaneous formatting and import

     aalhossary

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7. Commits on Sep 30, 2021

   • Disabling test, #952

     josemduarte

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8. Commits on Jan 20, 2021

   • compiling

     sbittrich

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9. Commits on Jun 13, 2020

   • refactor code to java 8 streams api

     balaji-s

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10. Commits on Jan 3, 2019

    • Manually fix cases of space indentation identation found by

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      sbliven

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    • Automatically convert spaces to tabs

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      sbliven

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    • Remove trailing spaces from java files

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      sbliven

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11. Commits on Mar 15, 2018

    • Converting junit3 to 4, thanks intellij

      josemduarte

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12. Commits on Mar 14, 2018

    • Merge pull request #749 from josemduarte/removeV4deprecations

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      josemduarte

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    • Add license to all files

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      sbliven

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13. Commits on Mar 12, 2018

    • Removing deprecations from v4

      josemduarte

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14. Commits on Sep 8, 2017

    • Fixing phosphosite urls and changing default url timeout to 30s

      josemduarte

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15. Commits on Apr 26, 2017

    • Changing all line ending to unix (to match .gitattributes)

      sbliven

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16. Commits on Nov 30, 2016

    • addressing requested changes re. throwing exceptions.

      andreasprlic

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    • moving to Java 7

      andreasprlic

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    • now also accepting old header line

      andreasprlic

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    • #610 switching test to junit version 4

      andreasprlic

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17. Commits on Nov 29, 2016

    • creating local dir, if it does not exist.

      andreasprlic

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    • fix for #610

      andreasprlic

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18. Commits on Aug 18, 2016

    • making output less verbose

      andreasprlic

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    • setting default log level to warn

      andreasprlic

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19. Commits on Aug 8, 2016

    • new utility classes to detect if a Group is polymeric, an amino acid, or a nucleotide group.

      andreasprlic

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20. Commits on Jun 15, 2016

    • Merge branch 'master' of github.com:biojava/biojava

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      andreasprlic

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    • some formatting improvements.

      andreasprlic

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    • Merge branch 'bugfixes-4.2'

      sbliven

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21. Commits on Jun 14, 2016

    • merging in latest ptm modifications from master branch

      pwrose

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    • Updating ptm list.

      pwrose

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    • Added list of chromophores to ptm_list.xml file, updated unit tests

      pwrose

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22. Commits on Jun 10, 2016

    • Reverting some changes to be compliant with the "old" way of doing chain IDs.

      andreasprlic

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    • Merge pull request #502 from andreasprlic/master

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      josemduarte

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