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1. Commits on Jun 14, 2016

   • merging in latest ptm modifications from master branch

     pwrose

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   • Updating ptm list.

     pwrose

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2. Commits on Jun 10, 2016

   • Reverting some changes to be compliant with the "old" way of doing chain IDs.

     andreasprlic

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   • merging in updated ptm_list.xml

     andreasprlic

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   • merging in updated ptm_list.xml

     andreasprlic

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   • merging in updated ptm_list.xml

     andreasprlic

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   • distance have to be looked up by element name, not atom name

     andreasprlic

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   • Adds a new definitions file so the code can correctly detect Metal bonds. Slightly more efficient representation of standard amino acids.

     andreasprlic

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   • merging in fixes related to PTMs into bug fix branch

     andreasprlic

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3. Commits on Mar 10, 2016

   • Light cleanup:

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     sbliven

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   • Running spacestotabs on recent changes

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     sbliven

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4. Commits on Mar 9, 2016

   • Merge branch 'master' into removeLoadChemCompInfo

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     josemduarte

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   • More whitespace fixes

     sbliven

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   • Converting initial spaces to tabs.

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     sbliven

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   • Remove trailing whitespace globally from .java files

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     sbliven

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5. Commits on Mar 8, 2016

   • Removing loadChemCompInfo, some tests don't pass yet

     josemduarte

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6. Commits on Oct 6, 2015

   • Converting all line endings to Unix.

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     sbliven

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7. Commits on Jan 30, 2015

   • more updates of wrong resource paths

     andreasprlic

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   • updating some hard coded paths

     andreasprlic

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   • Refactoring of all package names according to #245 #242 #240

     andreasprlic

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8. Commits on Jan 29, 2015

   • Ran Optimize Imports across the whole project.

     andreasprlic

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   • Major refactoring of package names in accordance with #245 #242 #240

     andreasprlic

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