Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
biojava
biojava
Repository navigation
Code
Issues
69
(69)
Pull requests
2
(2)
Actions
Security and quality
Insights
More
items
Commits
Breadcrumbs
History for
biojava
biojava-integrationtest
src
on
master
User selector
All users
Datepicker
All time
Commit history
Commits on Sep 19, 2026
Fixed ignored tests javadocs
josemduarte
committed
204dd7b
View commit details
Copy full SHA for 204dd7b
View code at this point
Browse repository at this point
Commits on Sep 14, 2026
New ignored test to show difference of leader algo vs previous single linkage
josemduarte
committed
3c11483
View commit details
Copy full SHA for 3c11483
View code at this point
Browse repository at this point
Commits on Aug 30, 2026
Assert the coefficient checksum only when the server offers one
Show description for d5a8f1f
aalhossary
committed
d5a8f1f
View commit details
Copy full SHA for d5a8f1f
View code at this point
Browse repository at this point
Convert the density tests to JUnit 5
Show description for 0b57360
aalhossary
committed
0b57360
View commit details
Copy full SHA for 0b57360
View code at this point
Browse repository at this point
Test the density fetching, offline and against the live services
Show description for c8820ef
aalhossary
committed
c8820ef
View commit details
Copy full SHA for c8820ef
View code at this point
Browse repository at this point
Commits on Aug 17, 2026
Test every ECOD layout offline
Show description for 2ad8e09
aalhossary
committed
2ad8e09
View commit details
Copy full SHA for 2ad8e09
View code at this point
Browse repository at this point
Commits on Dec 14, 2025
Refactor: fix SonarQube S1155 issues (#1079)
Pasjonat90D
committed
c0240dd
View commit details
Copy full SHA for c0240dd
View code at this point
Browse repository at this point
Commits on Jan 7, 2025
Javadoc fix: errors in integration-test module
josemduarte
committed
c3079ea
View commit details
Copy full SHA for c3079ea
View code at this point
Browse repository at this point
Javadoc fix: remaining errors in structure module. Mostly obsolete references
josemduarte
committed
2bbc824
View commit details
Copy full SHA for 2bbc824
View code at this point
Browse repository at this point
Commits on Jul 20, 2024
Make test work with bcif, instead of mmtf
josemduarte
committed
2274ea3
View commit details
Copy full SHA for 2274ea3
View code at this point
Browse repository at this point
Commits on Aug 28, 2023
Fixing test after remediation
josemduarte
committed
457b6d8
View commit details
Copy full SHA for 457b6d8
View code at this point
Browse repository at this point
Commits on May 10, 2023
Writing out entity info in CIF
josemduarte
committed
615a570
View commit details
Copy full SHA for 615a570
View code at this point
Browse repository at this point
Commits on Apr 3, 2023
Test fixes after 4hhb remediation
josemduarte
committed
a83058a
View commit details
Copy full SHA for a83058a
View code at this point
Browse repository at this point
Commits on Jan 30, 2023
More nullpdbid tests (#1056)
Show description for 043eb40
josemduarte
and
sbliven
authored
043eb40
View commit details
Copy full SHA for 043eb40
View code at this point
Browse repository at this point
Commits on Dec 2, 2021
Changing new line delimiters to \\R
aalhossary
committed
126f4ec
View commit details
Copy full SHA for 126f4ec
View code at this point
Browse repository at this point
Commits on Oct 29, 2021
Support extended pdbid (#950)
Show description for 12d348d
aalhossary
authored
12d348d
View commit details
Copy full SHA for 12d348d
View code at this point
Browse repository at this point
Commits on Oct 1, 2021
Merge branch 'master' into issue929
josemduarte
committed
7f160ef
View commit details
Copy full SHA for 7f160ef
View code at this point
Browse repository at this point
Commits on Sep 27, 2021
Obsolete scop test. Endpoint is not available anymore
josemduarte
committed
491891f
View commit details
Copy full SHA for 491891f
View code at this point
Browse repository at this point
Commits on Sep 22, 2021
Fix for #929
josemduarte
committed
f4b201b
View commit details
Copy full SHA for f4b201b
View code at this point
Browse repository at this point
Commits on Sep 20, 2021
Merge pull request #961 from josemduarte/issue943
Show description for 6e3ccb0
josemduarte
authored
6e3ccb0
View commit details
Copy full SHA for 6e3ccb0
View code at this point
Browse repository at this point
Commits on Aug 30, 2021
Fixing #943
josemduarte
committed
15e1675
View commit details
Copy full SHA for 15e1675
View code at this point
Browse repository at this point
Commits on Aug 23, 2021
Moving KeyWords to PDBHeader
Show description for 0913958
aalhossary
committed
0913958
View commit details
Copy full SHA for 0913958
View code at this point
Browse repository at this point
Commits on Aug 4, 2021
Updated Keywords parsing in mmCIF files
aalhossary
committed
76cf580
View commit details
Copy full SHA for 76cf580
View code at this point
Browse repository at this point
Commits on Aug 3, 2021
Parse/write Keywords from/to mmCIF files
Show description for 86cb468
aalhossary
committed
86cb468
View commit details
Copy full SHA for 86cb468
View code at this point
Browse repository at this point
Commits on Jul 4, 2021
update junit3->junit4 test, remove doc references to ju3
Richard Adams
committed
704bda6
View commit details
Copy full SHA for 704bda6
View code at this point
Browse repository at this point
Commits on Jan 27, 2021
docs
sbittrich
committed
454830a
View commit details
Copy full SHA for 454830a
View code at this point
Browse repository at this point
Commits on Jan 26, 2021
Merge remote-tracking branch 'upstream/master' into bcif-integration
Show description for 16792bd
sbittrich
committed
16792bd
View commit details
Copy full SHA for 16792bd
View code at this point
Browse repository at this point
Commits on Jan 25, 2021
new filetype param
sbittrich
committed
61bd8e8
View commit details
Copy full SHA for 61bd8e8
View code at this point
Browse repository at this point
Commits on Jan 20, 2021
compiling
sbittrich
committed
1b164a9
View commit details
Copy full SHA for 1b164a9
View code at this point
Browse repository at this point
Commits on Nov 24, 2020
Fixing test
josemduarte
committed
245742d
View commit details
Copy full SHA for 245742d
View code at this point
Browse repository at this point
Commits on Jul 5, 2020
Bugfix: ScopFactory wasn't working after last commit
josemduarte
committed
31939ad
View commit details
Copy full SHA for 31939ad
View code at this point
Browse repository at this point
Removing RemoteScopInstallation and all downstream usages
josemduarte
committed
a73eee7
View commit details
Copy full SHA for a73eee7
View code at this point
Browse repository at this point
Commits on Apr 18, 2020
Merge pull request #867 from josemduarte/interface-finder
Show description for 36073a8
josemduarte
authored
36073a8
View commit details
Copy full SHA for 36073a8
View code at this point
Browse repository at this point
Commits on Apr 15, 2020
Comment out 3R8R from localSymmetry test
lafita
committed
3a93e1c
View commit details
Copy full SHA for 3a93e1c
View code at this point
Browse repository at this point
Commits on Jan 25, 2020
Merge branch 'master' into interface-finder
josemduarte
committed
0df3813
View commit details
Copy full SHA for 0df3813
View code at this point
Browse repository at this point
Previous
Next
You can’t perform that action at this time.