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1. Commits on Sep 17, 2026

   • Fixing test to be compatible with all platforms and checkout styles

     josemduarte

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2. Commits on Aug 28, 2026

   • Finish biojava-genome JUnit 5 migration and drop junit-addons

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     Sergey Pyatykh

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   • Finish biojava-genome JUnit 5 migration and drop junit-addons

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     Sergey Pyatykh

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3. Commits on May 27, 2026

   • All tests in the biojava-genome module were migrated to junit5

     

     Sergey Pyatykh

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   • Issue 1038 - Test was refactored by using junit5 features

     

     Sergey Pyatykh

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4. Commits on Dec 14, 2025

   • Refactor: fix SonarQube S1155 issues (#1079)

     Pasjonat90D

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5. Commits on Nov 21, 2025

   • Fix RSPEC-1940 boolean checks

     JayKamsu

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6. Commits on Jan 7, 2025

   • Javadoc fix: errors in genome module

     josemduarte

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7. Commits on Jan 3, 2025

   • Javadoc fix: html-like tag not allowed

     josemduarte

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8. Commits on May 15, 2024

   • Fix issue s1319 Declarations should use Java collection interfaces on biojava-core

     jlerbsc

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9. Commits on Apr 18, 2024

   • Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')

     jlerbsc

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10. Commits on Mar 5, 2024

    • fix sonar issue 2629 Logging arguments should not require evaluation

      jlerbsc

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11. Commits on Feb 26, 2024

    • fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

      jlerbsc

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12. Commits on Jun 30, 2023

    • Merge remote-tracking branch 'origin/master'

      josemduarte

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    • Try-with from sonar

      josemduarte

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    • Try-with from sonar and main cleanup

      josemduarte

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13. Commits on Jun 27, 2023

    • Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)

      jlerbsc

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14. Commits on May 7, 2023

    • Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052

      

      Pavan Kumar, Thummuru

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15. Commits on Apr 16, 2023

    • Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052

      tmrpavan

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16. Commits on Nov 18, 2022

    • vuln-fix: Temporary File Information Disclosure

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      JLLeitschuh

      and

      TeamModerne

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17. Commits on Feb 1, 2022

    • Removing a utility tool that was really internal to biojava, but that was using external resources that are now gone.

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      josemduarte

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18. Commits on Jun 9, 2021

    • Another https test fix

      josemduarte

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19. Commits on Feb 26, 2021

    • Address review comments.

      heuermh

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20. Commits on Feb 22, 2021

    • Add copy constructor to FastqBuilder.

      heuermh

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    • Collect to ArrayList rather than LinkedList.

      heuermh

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21. Commits on Sep 17, 2020

    • Remove unused import

      jean-philippe-martin

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    • Add Javadoc to the overload

      jean-philippe-martin

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    • Add GFF3Reader overload that accepts Path

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      jean-philippe-martin

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22. Commits on Apr 30, 2020

    • Fixed impact of refactoring on genome module

      paolopavan

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23. Commits on Jan 3, 2019

    • Manually fix cases of space indentation identation found by

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      sbliven

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    • Automatically convert spaces to tabs

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      sbliven

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    • Remove trailing spaces from java files

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      sbliven

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24. Commits on Jan 2, 2019

    • Merge branch 'bugfixes-4.2'

      sbliven

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25. Commits on Mar 15, 2018

    • Converting junit3 to 4, thanks intellij

      josemduarte

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26. Commits on Mar 14, 2018

    • Merge pull request #749 from josemduarte/removeV4deprecations

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      josemduarte

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