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biojava
biojava
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biojava
biojava-structure
src
main
java
org
biojava
nbio
structure
Structure.java
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java9
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Commits on Jun 29, 2017
Make BioJava Structure objects serializable
lafita
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2d99f57
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Commits on Nov 7, 2016
Update to biojava 5.0 ligand and chain model
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sbliven
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019fa96
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Commits on Nov 2, 2016
Moved addGroupToStructure methods to StructureTools
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sbliven
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820a924
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Commits on Aug 11, 2016
Minor javadoc & warnings fixes
sbliven
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1bf0202
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Commits on Jun 7, 2016
Refactored getChain(int chainIndex) and getChain(int modelNr, int chainIndex) to getChainByIndex().
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abradle
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351464c
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Commits on May 12, 2016
Reverting getPolyChainsByPDB, keeping getNonPolyChainsByPDB
josemduarte
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f485d07
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Merge remote-tracking branch 'origin/asymChainIds' into asymChainIds
josemduarte
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Fixing more problems with pdb parsing: water chains weren't split out
josemduarte
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9af88b2
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Commits on May 11, 2016
changing get*ChainByPDB methods signature to return List<Chain>
andreasprlic
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400a7d5
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Commits on May 10, 2016
Important bug fixes and docs in Structure/StructureImpl.
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josemduarte
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bf91324
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Commits on May 9, 2016
Removed obsolete Structure.getHetatoms, more cleanup and docs
josemduarte
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403cd68
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Commits on May 6, 2016
Added Structure.getWaterChains and fixed some tests
josemduarte
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e143252
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Major modification to structure methods and docs.
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josemduarte
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cc99ac1
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More docs
josemduarte
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e1bf594
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Commits on May 5, 2016
Clean up of warnings and removed some old deprecations
josemduarte
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291fae5
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fixing another unit test
andreasprlic
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9d36cfa
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Commits on May 4, 2016
fixing AtomCacheTest
andreasprlic
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c4ad79c
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addressing several broken unit tests.
andreasprlic
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02d10b8
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basic implementation of #469 However still many problems with unit tests
andreasprlic
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812b963
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Commits on Mar 31, 2016
Refactoring of Compound to EntityInfo
abradle
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4a41270
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Merge branch 'master' of github.com:biojava/biojava into dev
abradle
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0a31add
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Refactored Compound to EntityInfo
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abradle
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Commits on Mar 25, 2016
More refactoring and a bunch of fixes. TestLongPdbVsMmCif works now
josemduarte
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880aed2
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Commits on Mar 23, 2016
Refactoring of getters and setters.
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abradle
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ee59be3
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Commits on Mar 14, 2016
Updates to the Biojava code to include imporved handling of Entity information.
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abradle
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07e1b1c
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Commits on Mar 10, 2016
Light cleanup:
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sbliven
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38fbae1
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Running spacestotabs on recent changes
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sbliven
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5074cb2
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Commits on Mar 9, 2016
Converting initial spaces to tabs.
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sbliven
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2417c23
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Remove trailing whitespace globally from .java files
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sbliven
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809312e
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Commits on Mar 4, 2016
Refactoring of Structure ssbonds interface, as described in #341
josemduarte
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6a2eaa0
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Commits on Mar 3, 2016
Removed some warnings and Structure.getConnections calls
josemduarte
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3e17e69
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Redoing how #341 is handled
josemduarte
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f9682fa
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Commits on Feb 5, 2016
Removing Structure's inheritence from StructureIdentifier
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sbliven
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70202d0
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Commits on Jan 28, 2016
Adding old StructureIdentifier methods as deprecated members of Structure
sbliven
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5a386b6
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Commits on Jan 20, 2016
Add Structure.get/setStructureIdentifier methods
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sbliven
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6017337
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