Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
biojava
biojava
Repository navigation
Code
Issues
69
(69)
Pull requests
2
(2)
Actions
Security and quality
Insights
More
items
Commits
Breadcrumbs
History for
biojava
biojava-structure
src
main
java
org
biojava
nbio
structure
Calc.java
on
java9
User selector
All users
Datepicker
All time
Commit history
Commits on Jan 23, 2018
Added comments/docs following the review.
Dmytro Guzenko
committed
df22da3
View commit details
Copy full SHA for df22da3
View code at this point
Browse repository at this point
Commits on Jan 19, 2018
Small refactoring for more flexible symmetry detection.
Dmytro Guzenko
committed
996c149
View commit details
Copy full SHA for 996c149
View code at this point
Browse repository at this point
Commits on Dec 9, 2017
Recursive transform for group
josemduarte
committed
e0c031b
View commit details
Copy full SHA for e0c031b
View code at this point
Browse repository at this point
Commits on Dec 8, 2017
Fixes for translate functions, similar to #715
josemduarte
committed
8a7e22c
View commit details
Copy full SHA for 8a7e22c
View code at this point
Browse repository at this point
Fixing also Calc.transform(Structure,Matrix4d)
josemduarte
committed
3a1ad26
View commit details
Copy full SHA for 3a1ad26
View code at this point
Browse repository at this point
Commits on Dec 7, 2017
Fix and unit test for #715
josemduarte
committed
bc9011a
View commit details
Copy full SHA for bc9011a
View code at this point
Browse repository at this point
Commits on Feb 15, 2017
Merge branch 'bugfixes-4.2' into master
sbliven
committed
637aee6
View commit details
Copy full SHA for 637aee6
View code at this point
Browse repository at this point
Commits on Jan 21, 2017
Now catching empty arrays in getCentroid
josemduarte
committed
80a3eaa
View commit details
Copy full SHA for 80a3eaa
View code at this point
Browse repository at this point
Now catching empty arrays in getCentroid
josemduarte
committed
feb9852
View commit details
Copy full SHA for feb9852
View code at this point
Browse repository at this point
Commits on Oct 3, 2016
Include Ligands in residue selections that fall within 7A.
Show description for 819c388
sbliven
committed
819c388
View commit details
Copy full SHA for 819c388
View code at this point
Browse repository at this point
Commits on Sep 19, 2016
Merge branch 'svdsuperimpIssue' into superpose
lafita
committed
cc79186
View commit details
Copy full SHA for cc79186
View code at this point
Browse repository at this point
Documentation and minor fix
lafita
committed
a8828ca
View commit details
Copy full SHA for a8828ca
View code at this point
Browse repository at this point
Commits on Sep 14, 2016
Issue #582 and some more work towards #545
josemduarte
committed
6a7284a
View commit details
Copy full SHA for 6a7284a
View code at this point
Browse repository at this point
Commits on Sep 12, 2016
Port methods from Calc to new Matrices class #558
lafita
committed
25c47de
View commit details
Copy full SHA for 25c47de
View code at this point
Browse repository at this point
Commits on Sep 9, 2016
Modifications from the SuperPosition changes w compile errors
lafita
committed
523920e
View commit details
Copy full SHA for 523920e
View code at this point
Browse repository at this point
Commits on Aug 31, 2016
Fix Calc centroid and center of mass documentation
lafita
committed
01287d7
View commit details
Copy full SHA for 01287d7
View code at this point
Browse repository at this point
Commits on Aug 3, 2016
Merge branch 'quaternion' into quatalign
Show description for 95510ca
lafita
committed
95510ca
View commit details
Copy full SHA for 95510ca
View code at this point
Browse repository at this point
Commits on Aug 2, 2016
Create CalcPoint Class to hold general methods with Point3d #545
lafita
committed
e6eac12
View commit details
Copy full SHA for e6eac12
View code at this point
Browse repository at this point
Commits on Jul 19, 2016
Move centroid of Point3d to Calc
Show description for 3e66215
lafita
committed
3e66215
View commit details
Copy full SHA for 3e66215
View code at this point
Browse repository at this point
Commits on Mar 9, 2016
Remove trailing whitespace globally from .java files
Show description for 809312e
sbliven
committed
809312e
View commit details
Copy full SHA for 809312e
View code at this point
Browse repository at this point
Commits on Nov 10, 2015
Helper to convert from Atom[] to Point3d[]
sbliven
committed
38a4034
View commit details
Copy full SHA for 38a4034
View code at this point
Browse repository at this point
Commits on Jul 22, 2015
Calc.transform() documentation and testing
lafita
committed
fdb5cb0
View commit details
Copy full SHA for fdb5cb0
View code at this point
Browse repository at this point
Commits on Jul 20, 2015
Unify Vecmath to JAMA conversion methods in Calc
Show description for 38c1e33
lafita
committed
38c1e33
View commit details
Copy full SHA for 38c1e33
View code at this point
Browse repository at this point
Fix bug in jama to vecmath conversion
lafita
committed
8f2ef09
View commit details
Copy full SHA for 8f2ef09
View code at this point
Browse repository at this point
Commits on Jun 16, 2015
Merge pull request #278 from sbliven/multaln
Show description for 85378c8
lafita
committed
85378c8
View commit details
Copy full SHA for 85378c8
View code at this point
Browse repository at this point
Commits on Jun 10, 2015
Method to transform Atom[] arrays in Calc
lafita
committed
531c6ba
View commit details
Copy full SHA for 531c6ba
View code at this point
Browse repository at this point
Commits on Jun 9, 2015
Delete unneccessary Exceptions
lafita
committed
35a58e6
View commit details
Copy full SHA for 35a58e6
View code at this point
Browse repository at this point
Fix bug with 4D Transformation Calc
Show description for d6be054
lafita
committed
d6be054
View commit details
Copy full SHA for d6be054
View code at this point
Browse repository at this point
Commits on May 29, 2015
Adding missing translation method
josemduarte
committed
24c7f6b
View commit details
Copy full SHA for 24c7f6b
View code at this point
Browse repository at this point
Commits on May 21, 2015
Adding vecmath output methods to Calc and SVDSuperimposer
Show description for 55f581b
sbliven
committed
55f581b
View commit details
Copy full SHA for 55f581b
View code at this point
Browse repository at this point
Commits on May 20, 2015
Fixing #275 and adding a test for it
josemduarte
committed
8cb64f6
View commit details
Copy full SHA for 8cb64f6
View code at this point
Browse repository at this point
Commits on Apr 28, 2015
Pose method to calculate background distances
Show description for 896f29c
lafita
committed
896f29c
View commit details
Copy full SHA for 896f29c
View code at this point
Browse repository at this point
Commits on Jan 30, 2015
Refactoring of all package names according to #245 #242 #240
andreasprlic
committed
28f55cb
View commit details
Copy full SHA for 28f55cb
View code at this point
Browse repository at this point
Loading
You can’t perform that action at this time.