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1. Commits on May 22, 2018

   • Fix for #770, use LinkedHashMaps to keep order of biological assembly

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     pwrose

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   • Fixes #770, bioassemblies are now kept in the same order as read in from

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     pwrose

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2. Commits on May 11, 2018

   • Converting some old loggers to slf4j. Clean up.

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3. Commits on May 4, 2018

   • Clean up

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   • Merge pull request #768 from josemduarte/issue767

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4. Commits on May 3, 2018

   • Cleanup and docs

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   • Test and fix for #767

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5. Commits on Apr 2, 2018

   • Check for null when accessing insertion codes. This fixes #761.

     pwrose

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6. Commits on Mar 15, 2018

   • Converting junit3 to 4, thanks intellij

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   • Converting package.html to package-info.java with intellij inspection

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7. Commits on Mar 14, 2018

   • Merge pull request #749 from josemduarte/removeV4deprecations

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   • Add latest database versions for SCOP and CATH

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   • Add license to all files

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8. Commits on Mar 13, 2018

   • modify atom cache locally in tests

     

     Dmytro Guzenko

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9. Commits on Mar 12, 2018

   • Merge pull request #748 from josemduarte/mavenPluginUpgrade

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   • Logging and removing comments

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   • Removing class deprecations from v4

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   • Removing deprecations from v4

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10. Commits on Mar 11, 2018

    • Fixing tests that were broken when running in maven

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    • Asserting in right order

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11. Commits on Mar 10, 2018

    • Issue with test: flushing cache before test

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    • Visibility

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    • Better visibility

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    • Fixing the sifts test to not use external resources, #606

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    • Merge pull request #735 from josemduarte/cryst1ParsingIssue

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    • Merge pull request #743 from lafita/qcp

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    • Merge pull request #745 from lafita/guiwrapper

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12. Commits on Mar 9, 2018

    • Fix the GuiWrapper class

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      lafita

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    • Fix #741

      lafita

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    • Reset the QCP 2-step calculation

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      lafita

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13. Commits on Mar 8, 2018

    • Merge pull request #737 from josemduarte/issue592

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14. Commits on Mar 7, 2018

    • Warnings cleanup

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    • Merge pull request #738 from josemduarte/jgraphtWarnings

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    • More specific exception

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    • Fixing docs, #474

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