Commits

Commit history

1. Commits on Mar 15, 2018

   • Converting junit3 to 4, thanks intellij

     josemduarte

     committed
     1458d85View commit details

     Copy full SHA for 1458d85

     View code at this pointBrowse repository at this point
2. Commits on Mar 12, 2018

   • Removing deprecations from v4

     josemduarte

     committed
     9dbf83cView commit details

     Copy full SHA for 9dbf83c

     View code at this pointBrowse repository at this point
3. Commits on Mar 7, 2018

   • Warnings cleanup

     josemduarte

     committed
     9b9837bView commit details

     Copy full SHA for 9b9837b

     View code at this pointBrowse repository at this point
4. Commits on Apr 26, 2017

   • Changing all line ending to unix (to match .gitattributes)

     sbliven

     committed
     21ea32aView commit details

     Copy full SHA for 21ea32a

     View code at this pointBrowse repository at this point
5. Commits on Sep 8, 2016

   • Remove some unimplemented methods in phylo

     lafita

     committed
     8494d94View commit details

     Copy full SHA for 8494d94

     View code at this pointBrowse repository at this point

   • Merge alignment and phylo modules #413

     lafita

     committed
     ef81887View commit details

     Copy full SHA for ef81887

     View code at this pointBrowse repository at this point
6. Commits on Aug 18, 2016

   • making output less verbose

     andreasprlic

     committed
     56e81e6View commit details

     Copy full SHA for 56e81e6

     View code at this pointBrowse repository at this point

   • setting default log level to warn

     andreasprlic

     committed
     07f244aView commit details

     Copy full SHA for 07f244a

     View code at this pointBrowse repository at this point
7. Commits on Jul 1, 2016

   • Cleanup - squid:S1858 - "toString()" should never be called on a String object

     

     Mohamed Ezzat

     committed
     082d860View commit details

     Copy full SHA for 082d860

     View code at this pointBrowse repository at this point
8. Commits on Jun 16, 2016

   • squid:S2272 - "Iterator.next()" methods should throw "NoSuchElementException"

     

     Mohamed Ezzat

     committed
     f3f7395View commit details

     Copy full SHA for f3f7395

     View code at this pointBrowse repository at this point
9. Commits on Jun 15, 2016

   • squid:S2063 - Comparators should be Serializable

     

     Mohamed Ezzat

     committed
     23136cbView commit details

     Copy full SHA for 23136cb

     View code at this pointBrowse repository at this point
10. Commits on Apr 24, 2016

    • squid:S2178 - Short-circuit logic should be used in boolean contexts

      

      Mohamed Ezzat

      committed
      837e844View commit details

      Copy full SHA for 837e844

      View code at this pointBrowse repository at this point
11. Commits on Mar 10, 2016

    • Light cleanup:

      Show description for 38fbae1
      sbliven

      committed
      38fbae1View commit details

      Copy full SHA for 38fbae1

      View code at this pointBrowse repository at this point

    • Running spacestotabs on recent changes

      Show description for 5074cb2
      sbliven

      committed
      5074cb2View commit details

      Copy full SHA for 5074cb2

      View code at this pointBrowse repository at this point
12. Commits on Mar 9, 2016

    • Merge branch 'master' into removeLoadChemCompInfo

      Show description for d1b5c48
      josemduarte

      committed
      d1b5c48View commit details

      Copy full SHA for d1b5c48

      View code at this pointBrowse repository at this point

    • Removing unnecessary casts

      sbliven

      committed
      38934acView commit details

      Copy full SHA for 38934ac

      View code at this pointBrowse repository at this point

    • More whitespace fixes

      sbliven

      committed
      af59f90View commit details

      Copy full SHA for af59f90

      View code at this pointBrowse repository at this point

    • Removing unused imports

      sbliven

      committed
      e6b0dccView commit details

      Copy full SHA for e6b0dcc

      View code at this pointBrowse repository at this point

    • Converting initial spaces to tabs.

      Show description for 2417c23
      sbliven

      committed
      2417c23View commit details

      Copy full SHA for 2417c23

      View code at this pointBrowse repository at this point

    • Remove trailing whitespace globally from .java files

      Show description for 809312e
      sbliven

      committed
      809312eView commit details

      Copy full SHA for 809312e

      View code at this pointBrowse repository at this point

    • Update to remove docstring

      abradle

      committed
      7affe5bView commit details

      Copy full SHA for 7affe5b

      View code at this pointBrowse repository at this point

    • Merge remote-tracking branch 'upstream/master' into removeLoadChemCompInfo

      josemduarte

      committed
      892c03dView commit details

      Copy full SHA for 892c03d

      View code at this pointBrowse repository at this point

    • Merge pull request #427 from abradle/master

      Show description for b6b0525
      josemduarte

      committed
      b6b0525View commit details

      Copy full SHA for b6b0525

      View code at this pointBrowse repository at this point
13. Commits on Mar 8, 2016

    • Fixing a few bugs that arose after loadChemCompInfo removal, #426

      Show description for 8da9d07
      josemduarte

      committed
      8da9d07View commit details

      Copy full SHA for 8da9d07

      View code at this pointBrowse repository at this point

    • Create a test for issue #288 sub-optimal MSA

      Show description for e449976
      lafita

      committed
      e449976View commit details

      Copy full SHA for e449976

      View code at this pointBrowse repository at this point
14. Commits on Mar 7, 2016

    • Updates to make serializable for Spark

      abradle

      committed
      d85e331View commit details

      Copy full SHA for d85e331

      View code at this pointBrowse repository at this point
15. Commits on Jan 15, 2016

    • Fix typo in GuideTreeTest

      lafita

      committed
      6c4fbc1View commit details

      Copy full SHA for 6c4fbc1

      View code at this pointBrowse repository at this point

    • Fix broken GuideTreeTest

      Show description for e134daf
      lafita

      committed
      e134dafView commit details

      Copy full SHA for e134daf

      View code at this pointBrowse repository at this point
16. Commits on Nov 17, 2015

    • Generalize the GuideTree calculation using phylo

      lafita

      committed
      9ca9ce3View commit details

      Copy full SHA for 9ca9ce3

      View code at this pointBrowse repository at this point
17. Commits on Nov 12, 2015

    • Merge commit '248cc08c7fbbdc02249bcac0f10481127b7d3ac7'

      josemduarte

      committed
      3abb93fView commit details

      Copy full SHA for 3abb93f

      View code at this pointBrowse repository at this point
18. Commits on Oct 6, 2015

    • Converting all line endings to Unix.

      Show description for 124269e
      sbliven

      committed
      124269eView commit details

      Copy full SHA for 124269e

      View code at this pointBrowse repository at this point
19. Commits on Sep 16, 2015

    • Massive refactoring: moved alignment data structures from biojava-alignment to biojava-core.

      Show description for 5ad3cc9
      paolopavan

      committed
      5ad3cc9View commit details

      Copy full SHA for 5ad3cc9

      View code at this pointBrowse repository at this point
20. Commits on Mar 18, 2015

    • Added a more complex test for NeedlemanWunsch using an alignment done by hand.

      

      dmyersturnbull

      authored and

      sbliven

      committed
      ca1f9c7View commit details

      Copy full SHA for ca1f9c7

      View code at this pointBrowse repository at this point
21. Commits on Jan 30, 2015

    • Refactoring of all package names according to #245 #242 #240

      andreasprlic

      committed
      28f55cbView commit details

      Copy full SHA for 28f55cb

      View code at this pointBrowse repository at this point
22. Commits on Jan 29, 2015

    • Ran Optimize Imports across the whole project.

      andreasprlic

      committed
      ac22449View commit details

      Copy full SHA for ac22449

      View code at this pointBrowse repository at this point