Commits

Commit history

1. Commits on Jun 18, 2018

   • Revert fix for mmcif files without auth_seq_id column

     Show description for 08ab3e1
     sbliven

     committed
     08ab3e1View commit details

     Copy full SHA for 08ab3e1

     View code at this pointBrowse repository at this point
2. Commits on Jun 14, 2018

   • Fix NullPointer when restoring global state

     Show description for c1c3c30
     sbliven

     committed
     c1c3c30View commit details

     Copy full SHA for c1c3c30

     View code at this pointBrowse repository at this point

   • Add GlobalsHelper class to manage our global state

     Show description for 13f267c
     sbliven

     committed
     13f267cView commit details

     Copy full SHA for 13f267c

     View code at this pointBrowse repository at this point
3. Commits on Jun 12, 2018

   • Incorporating suggestions from @josemduarte

     Show description for f5b325f
     sbliven

     committed
     f5b325fView commit details

     Copy full SHA for f5b325f

     View code at this pointBrowse repository at this point
4. Commits on Jun 8, 2018

   • Set and restore the ChemCompGroupFactory singleton

     Show description for 62fb2a4
     sbliven

     committed
     62fb2a4View commit details

     Copy full SHA for 62fb2a4

     View code at this pointBrowse repository at this point

   • Re-download empty structure or chemical component structures

     Show description for 6ea9ae7
     sbliven

     committed
     6ea9ae7View commit details

     Copy full SHA for 6ea9ae7

     View code at this pointBrowse repository at this point

   • Make tests for #703 fail with an assertion

     Show description for b207d34
     sbliven

     committed
     b207d34View commit details

     Copy full SHA for b207d34

     View code at this pointBrowse repository at this point

   • Support initial comments in MMCif files (e.g. those generated by PyMOL)

     sbliven

     committed
     c3cec91View commit details

     Copy full SHA for c3cec91

     View code at this pointBrowse repository at this point
5. Commits on Jun 4, 2018

   • Add test for #703

     sbliven

     committed
     4785d57View commit details

     Copy full SHA for 4785d57

     View code at this pointBrowse repository at this point

   • Improving CathInstallation logging

     Show description for 5c1a335
     sbliven

     committed
     5c1a335View commit details

     Copy full SHA for 5c1a335

     View code at this pointBrowse repository at this point
6. Commits on Jan 12, 2018

   • Fix rcsb/symmetry#92: NullPointerException

     sbliven

     committed
     0b24cebView commit details

     Copy full SHA for 0b24ceb

     View code at this pointBrowse repository at this point
7. Commits on Dec 8, 2017

   • Back porting fix and test for #716

     josemduarte

     committed
     8f5d03dView commit details

     Copy full SHA for 8f5d03d

     View code at this pointBrowse repository at this point

   • Fix and unit test for #715

     josemduarte

     committed
     fe8c716View commit details

     Copy full SHA for fe8c716

     View code at this pointBrowse repository at this point
8. Commits on Nov 16, 2017

   • Backporting bugfix from 5.0 branch

     josemduarte

     committed
     56b9d07View commit details

     Copy full SHA for 56b9d07

     View code at this pointBrowse repository at this point
9. Commits on Oct 19, 2017

   • Merge pull request #707 from edlunde-dnastar/linelength424

     Show description for 58b00ff
     josemduarte

     authored
     58b00ffView commit details

     Copy full SHA for 58b00ff

     View code at this pointBrowse repository at this point

   • Fixing test issues related to v5 and changes in rcsb

     josemduarte

     committed
     b840f05View commit details

     Copy full SHA for b840f05

     View code at this pointBrowse repository at this point
10. Commits on Oct 18, 2017

    • Changes for CONECT/LINK

      larsonmattr

      committed
      e88637cView commit details

      Copy full SHA for e88637c

      View code at this pointBrowse repository at this point
11. Commits on Jul 6, 2017

    • Better http than https

      josemduarte

      committed
      a38c8c8View commit details

      Copy full SHA for a38c8c8

      View code at this pointBrowse repository at this point

    • Updating ligand URLs to latest RCSB convention

      josemduarte

      committed
      dc7f3eaView commit details

      Copy full SHA for dc7f3ea

      View code at this pointBrowse repository at this point
12. Commits on Jul 5, 2017

    • Updating dssp urls to latest RCSB convention

      josemduarte

      committed
      4bdd304View commit details

      Copy full SHA for 4bdd304

      View code at this pointBrowse repository at this point
13. Commits on Feb 18, 2017

    • Catching empty coordinates earlier in quat sym detection

      josemduarte

      committed
      0f322eeView commit details

      Copy full SHA for 0f322ee

      View code at this pointBrowse repository at this point
14. Commits on Feb 15, 2017

    • Fix Quaternary symmetry symmetry detection bug

      Show description for ac19532
      sbliven

      committed
      ac19532View commit details

      Copy full SHA for ac19532

      View code at this pointBrowse repository at this point
15. Commits on Feb 10, 2017

    • Better rules for Quaternary symm self-alignments

      Show description for 89ac11a
      sbliven

      committed
      89ac11aView commit details

      Copy full SHA for 89ac11a

      View code at this pointBrowse repository at this point
16. Commits on Jan 21, 2017

    • Now catching empty arrays in getCentroid

      josemduarte

      committed
      feb9852View commit details

      Copy full SHA for feb9852

      View code at this pointBrowse repository at this point

    • Less verbose logging in AsaCalculator

      josemduarte

      committed
      c11c0d2View commit details

      Copy full SHA for c11c0d2

      View code at this pointBrowse repository at this point

    • Better logging in symmetry package

      josemduarte

      committed
      7f8659aView commit details

      Copy full SHA for 7f8659a

      View code at this pointBrowse repository at this point

    • Fix for #631

      josemduarte

      committed
      afd6fcbView commit details

      Copy full SHA for afd6fcb

      View code at this pointBrowse repository at this point
17. Commits on Nov 30, 2016

    • Added exception handler for out-of-bounds errors when parsing lines, usually indicative of misformated lines.

      Show description for 50c34d3
      

      Matt Larson

      committed
      50c34d3View commit details

      Copy full SHA for 50c34d3

      View code at this pointBrowse repository at this point
18. Commits on Nov 23, 2016

    • Adding non-standard sg check to pdb parser

      josemduarte

      committed
      2d4a720View commit details

      Copy full SHA for 2d4a720

      View code at this pointBrowse repository at this point

    • Fixed bug: NPE for CrystalBuilder on 4hhb. Moved TestCrystalBuilder to integrationtest.

      josemduarte

      committed
      a2f900cView commit details

      Copy full SHA for a2f900c

      View code at this pointBrowse repository at this point

    • Now using the new fields from CrystalBuilder

      josemduarte

      committed
      cfd6f4aView commit details

      Copy full SHA for cfd6f4a

      View code at this pointBrowse repository at this point
19. Commits on Nov 22, 2016

    • Some extra rare fields in atom_sites

      josemduarte

      committed
      1dbfcbdView commit details

      Copy full SHA for 1dbfcbd

      View code at this pointBrowse repository at this point

    • Fixing npe introduced in last commit

      josemduarte

      committed
      b824612View commit details

      Copy full SHA for b824612

      View code at this pointBrowse repository at this point

    • Implementing new crystallographic metadata fields.

      josemduarte

      committed
      508e770View commit details

      Copy full SHA for 508e770

      View code at this pointBrowse repository at this point

    • Implementing parsing of atom_sites category in mmcif parser/consumer

      josemduarte

      committed
      ad79f0eView commit details

      Copy full SHA for ad79f0e

      View code at this pointBrowse repository at this point