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1. Commits on Jan 3, 2025

   • Javadoc fix: all error in alignment module

     josemduarte

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2. Commits on Jun 12, 2024

   • Fix issue s1319 Declarations should use Java collection interfaces on biojava-core and dependencies

     jlerbsc

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3. Commits on May 15, 2024

   • Fix issue s1319 Declarations should use Java collection interfaces on biojava-core

     jlerbsc

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4. Commits on Apr 18, 2024

   • Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')

     jlerbsc

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5. Commits on Feb 26, 2024

   • fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

     jlerbsc

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6. Commits on Jun 27, 2023

   • Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)

     jlerbsc

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7. Commits on May 21, 2023

   • Fix Sonar S1130 throws declarations should not be superfluous

     jlerbsc

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8. Commits on Jul 26, 2022

   • Test local, linear scheme alignment

     

     aegugup

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   • Fix pointers[y] is null error

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     aegugup

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9. Commits on Oct 21, 2021

   • Unifying the way ALHOSSARY is written across different platform

     aalhossary

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10. Commits on Jan 3, 2019

    • Automatically convert spaces to tabs

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      sbliven

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11. Commits on Jul 29, 2018

    • Merge branch 'issue712'

      MikkelVestergaard

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12. Commits on Jul 28, 2018

    • Made a couple of test platform independent

      MikkelVestergaard

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13. Commits on Mar 15, 2018

    • Converting junit3 to 4, thanks intellij

      josemduarte

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14. Commits on Mar 12, 2018

    • Removing deprecations from v4

      josemduarte

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15. Commits on Mar 7, 2018

    • Warnings cleanup

      josemduarte

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16. Commits on Apr 26, 2017

    • Changing all line ending to unix (to match .gitattributes)

      sbliven

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17. Commits on Sep 8, 2016

    • Remove some unimplemented methods in phylo

      lafita

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    • Merge alignment and phylo modules #413

      lafita

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18. Commits on Aug 18, 2016

    • making output less verbose

      andreasprlic

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    • setting default log level to warn

      andreasprlic

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19. Commits on Jul 1, 2016

    • Cleanup - squid:S1858 - "toString()" should never be called on a String object

      

      Mohamed Ezzat

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20. Commits on Jun 16, 2016

    • squid:S2272 - "Iterator.next()" methods should throw "NoSuchElementException"

      

      Mohamed Ezzat

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21. Commits on Jun 15, 2016

    • squid:S2063 - Comparators should be Serializable

      

      Mohamed Ezzat

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22. Commits on Apr 24, 2016

    • squid:S2178 - Short-circuit logic should be used in boolean contexts

      

      Mohamed Ezzat

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23. Commits on Mar 10, 2016

    • Light cleanup:

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      sbliven

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    • Running spacestotabs on recent changes

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      sbliven

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24. Commits on Mar 9, 2016

    • Merge branch 'master' into removeLoadChemCompInfo

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      josemduarte

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    • Removing unnecessary casts

      sbliven

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    • More whitespace fixes

      sbliven

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    • Removing unused imports

      sbliven

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    • Converting initial spaces to tabs.

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      sbliven

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    • Remove trailing whitespace globally from .java files

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      sbliven

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    • Update to remove docstring

      abradle

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    • Merge remote-tracking branch 'upstream/master' into removeLoadChemCompInfo

      josemduarte

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