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1. Commits on Jan 3, 2025

   • Javadoc fix: html-like tag not allowed

     josemduarte

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2. Commits on May 15, 2024

   • Fix issue s1319 Declarations should use Java collection interfaces on biojava-core

     jlerbsc

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3. Commits on Nov 18, 2022

   • vuln-fix: Temporary File Information Disclosure

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     JLLeitschuh

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     TeamModerne

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4. Commits on Feb 1, 2022

   • Removing a utility tool that was really internal to biojava, but that was using external resources that are now gone.

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     josemduarte

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5. Commits on Jun 9, 2021

   • Another https test fix

     josemduarte

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6. Commits on Feb 26, 2021

   • Address review comments.

     heuermh

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7. Commits on Feb 22, 2021

   • Add copy constructor to FastqBuilder.

     heuermh

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8. Commits on Jan 3, 2019

   • Automatically convert spaces to tabs

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     sbliven

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   • Remove trailing spaces from java files

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     sbliven

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9. Commits on Mar 15, 2018

   • Converting junit3 to 4, thanks intellij

     josemduarte

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10. Commits on Mar 14, 2018

    • Add license to all files

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      sbliven

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11. Commits on Mar 7, 2018

    • Unneeded imports

      josemduarte

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    • Merging sequencing module into genome module as per #536

      josemduarte

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12. Commits on Aug 15, 2017

    • improvements

      valasatava

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    • Setter for chromosome coordinate systems: 0-based, 1-based

      valasatava

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    • unit test fix

      valasatava

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    • CDS length calculation bug fix

      valasatava

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13. Commits on Apr 26, 2017

    • Changing all line ending to unix (to match .gitattributes)

      sbliven

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14. Commits on Apr 7, 2017

    • Get CDS ranges patch

      valasatava

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15. Commits on Feb 24, 2017

    • Chromosome mapping tool: unit test to check handling multiple UTRs preceding the coding region

      

      Yana Valasatava

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    • Unit tests for converting a genomic position to the position on mRNA for the genes leaving on the forward strand

      

      Yana Valasatava

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16. Commits on Feb 23, 2017

    • Bugfix: chromosome mapping tool returns -1 if position falls outside coding region on the forward strand

      

      Yana Valasatava

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17. Commits on Aug 28, 2016

    • Merge pull request #567 from andviane/master

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      josemduarte

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18. Commits on Aug 25, 2016

    • More tests for issue #355

      andviane

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    • Pulling in the @josemduarte test case for issue #355

      andviane

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19. Commits on Aug 18, 2016

    • making output less verbose

      andreasprlic

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    • setting default log level to warn

      andreasprlic

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20. Commits on Jul 27, 2016

    • #534 addressing @joseduarte 's comments

      andreasprlic

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21. Commits on Jul 26, 2016

    • Merge branch 'master' of github.com:andreasprlic/biojava

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      andreasprlic

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    • adding a unit test for checking genomic ranges to CDS mapping tools

      andreasprlic

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22. Commits on Mar 9, 2016

    • Converting initial spaces to tabs.

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      sbliven

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    • Removing template messages

      sbliven

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    • Remove trailing whitespace globally from .java files

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      sbliven

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    • Running addlicense.sh

      sbliven

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23. Commits on Dec 16, 2015

    • New test and implementing a proper equals for Location

      josemduarte

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