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1. Commits on Feb 27, 2025

   • Merge pull request #1106 from josemduarte/cifparsing-lenient

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2. Commits on Feb 22, 2025

   • Review comment

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   • Fix: first model is model index 0

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3. Commits on Feb 21, 2025

   • Bugfix: ASA calculation was by default using all models. Now it will use model 1 by default. Added new constructor to choose model.

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   • Another safeguard, that applies to some PDB-IHM entries

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   • Lenient to missing atom_site.occupancy

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   • Handle more missing fields in struct_ref_seq

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4. Commits on Jan 8, 2025

   • Merge pull request #1103 from josemduarte/cifparser-gemmifile

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5. Commits on Jan 7, 2025

   • Javadoc fix: remaining errors in structure module. Mostly obsolete references

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   • Javadoc fix: most other errors in structure module

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   • Javadoc fix: many errors in struct align package

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   • Javadoc fix: many errors in struct align package

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6. Commits on Jan 6, 2025

   • Javadoc fix: many errors in struct align package

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   • More lenient parsing if some fields are missing (e.g. in files output by Gemmi)

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7. Commits on Jan 4, 2025

   • Javadoc fix: some more errors from structure module

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8. Commits on Jan 3, 2025

   • Javadoc fix: some more errors from structure module

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   • Javadoc fix: a few errors from structure module

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9. Commits on Aug 30, 2024

   • Add additional error checks to QuatSymmetry functions

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   • Fix CE-Symm bug relating to short subunits.

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   • Fix some typos

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10. Commits on Aug 9, 2024

    • Merge pull request #1098 from josemduarte/issue1096

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11. Commits on Jul 22, 2024

    • Removing functionality that uses mmtf.rcsb.org, now deprecated

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12. Commits on Jul 19, 2024

    • Bringing back alignPairs option, should fix #1096

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    • Some cleanups

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13. Commits on Jun 12, 2024

    • Fix issue s1319 Declarations should use Java collection interfaces on biojava-core and dependencies

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14. Commits on Apr 18, 2024

    • Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')

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15. Commits on Mar 6, 2024

    • Merge pull request #1086 from jlerbsc/master

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    • Merge pull request #1085 from josemduarte/miscfixes

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16. Commits on Mar 5, 2024

    • fix sonar issue 2629 Logging arguments should not require evaluation

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17. Commits on Mar 4, 2024

    • Merge pull request #1083 from josemduarte/parseEsmCifFix

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    • Replacing home-made copy by Files.copy. Other minor fixes

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18. Commits on Mar 2, 2024

    • Better with ternary if

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    • Be more lenient with some missing atom_site fields

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19. Commits on Feb 26, 2024

    • fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

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20. Commits on Jan 8, 2024

    • Changed the URLs to the mirrors from http to https. Changed the name of the URL path to reflect a change in the v2 naming.

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