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1. Commits on Aug 9, 2024

   • Merge pull request #1098 from josemduarte/issue1096

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2. Commits on Jul 22, 2024

   • Removing functionality that uses mmtf.rcsb.org, now deprecated

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3. Commits on Jul 20, 2024

   • Merge branch 'refs/heads/master' into issue1096

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   • Obsolete test: mmtf.rcsb.org was discontinued

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4. Commits on Jul 19, 2024

   • Bringing back alignPairs option, should fix #1096

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   • Some cleanups

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5. Commits on Jun 12, 2024

   • Fix issue s1319 Declarations should use Java collection interfaces on biojava-core and dependencies

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6. Commits on Apr 18, 2024

   • Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')

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7. Commits on Apr 8, 2024

   • Fixing test

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8. Commits on Mar 6, 2024

   • Merge pull request #1086 from jlerbsc/master

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   • Merge pull request #1085 from josemduarte/miscfixes

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9. Commits on Mar 5, 2024

   • fix sonar issue 2629 Logging arguments should not require evaluation

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10. Commits on Mar 4, 2024

    • Merge pull request #1083 from josemduarte/parseEsmCifFix

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    • Replacing home-made copy by Files.copy. Other minor fixes

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    • Adding test case

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11. Commits on Mar 2, 2024

    • Better with ternary if

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    • Be more lenient with some missing atom_site fields

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12. Commits on Feb 26, 2024

    • fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

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13. Commits on Jan 25, 2024

    • Merge pull request #1077 from hilbertglm/20240108-scop

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14. Commits on Jan 8, 2024

    • Changed the URLs to the mirrors from http to https. Changed the name of the URL path to reflect a change in the v2 naming.

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15. Commits on Jan 5, 2024

    • Updating test

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16. Commits on Dec 29, 2023

    • Updated to Jakarta JAXB and Java 17

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17. Commits on Jun 30, 2023

    • Merge remote-tracking branch 'origin/master'

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    • Try-with from sonar

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18. Commits on Jun 27, 2023

    • Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)

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19. Commits on Jun 21, 2023

    • Second fix for sonar rule 's1130' throws declarations should not be superfluous. This fix is specific to constructor declarations.

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20. Commits on Jun 2, 2023

    • Cleanup

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21. Commits on Jun 1, 2023

    • Merge pull request #1062 from jlerbsc/master

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22. Commits on May 24, 2023

    • Improvements from review comments

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23. Commits on May 21, 2023

    • Fix Sonar S1130 throws declarations should not be superfluous

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24. Commits on May 12, 2023

    • Fixing empty seqres groups for cif files with no _entity

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    • Fixing empty seqres groups for pdb files with not seqres

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25. Commits on May 11, 2023

    • Handling nulls in descriptions

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    • New test

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26. Commits on May 10, 2023

    • Writing out entity info in CIF

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