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Copy pathPassthroughIdentifier.java
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68 lines (60 loc) · 1.69 KB
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/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
*/
package org.biojava.nbio.structure;
import java.io.IOException;
import java.util.ArrayList;
import org.biojava.nbio.structure.align.util.AtomCache;
/**
* A stub StructureIdentifier, representing the full structure in all cases.
* @author Spencer Bliven
*
*/
public class PassthroughIdentifier implements StructureIdentifier {
private static final long serialVersionUID = -2773111624414448950L;
private String identifier;
public PassthroughIdentifier(String identifier) {
this.identifier = identifier;
}
@Override
public String getIdentifier() {
return identifier;
}
/**
* @return A SubstructureIdentifier without ranges (e.g. including all residues)
*/
@Override
public SubstructureIdentifier toCanonical() {
return new SubstructureIdentifier(null, new ArrayList<ResidueRange>());
}
@Override
public Structure reduce(Structure input) throws StructureException {
return input;
}
/**
* Passthrough identifiers don't know how to load a structure
* @return null
*/
@Override
public Structure loadStructure(AtomCache cache) throws StructureException,
IOException {
return null;
}
}