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  1. sequila sequila Public

    SeQuiLa: Distributed analytics for genomics based on Apache Spark!

    HTML 10 7

  2. polars-bio polars-bio Public

    Blazing-Fast Bioinformatic Operations on Python DataFrames

    Python 201 34

  3. datafusion-bio-formats datafusion-bio-formats Public

    Apache DataFusion table providers for bioinformatic file formats

    Rust 9 4

  4. vepyr vepyr Public

    vepyr (/ˈvaɪpər/) — VEP Yielding Performant Results — a blazing-fast Rust reimplementation of Ensembl's Variant Effect Predictor.

    Python 7

  5. datafusion-bio-functions datafusion-bio-functions Public

    Apache DataFusion functions for bioinformatic operations

    Rust 1 2

  6. vepyr-plugins vepyr-plugins Public

    vepyr plugin manifests for cache builder

    Python 3

Repositories

Showing 10 of 65 repositories
  • vepyr Public

    vepyr (/ˈvaɪpər/) — VEP Yielding Performant Results — a blazing-fast Rust reimplementation of Ensembl's Variant Effect Predictor.

    biodatageeks/vepyr's past year of commit activity
    Python 7 Apache-2.0 0 19 9 Updated Oct 2, 2026
  • datafusion-bio-functions Public

    Apache DataFusion functions for bioinformatic operations

    biodatageeks/datafusion-bio-functions's past year of commit activity
    Rust 1 Apache-2.0 2 32 19 Updated Oct 2, 2026
  • biodatageeks/nf-rare-var-assoc's past year of commit activity
    Nextflow 2 GPL-3.0 0 0 0 Updated Sep 25, 2026
  • polars-bio Public

    Blazing-Fast Bioinformatic Operations on Python DataFrames

    biodatageeks/polars-bio's past year of commit activity
    Python 201 Apache-2.0 34 38 9 Updated Sep 21, 2026
  • datafusion-bio-formats Public

    Apache DataFusion table providers for bioinformatic file formats

    biodatageeks/datafusion-bio-formats's past year of commit activity
    Rust 9 4 20 25 Updated Sep 21, 2026
  • biodatageeks/bioformats-benchmark's past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 1 Updated Sep 21, 2026
  • biodatageeks/nf-prepare-vcf's past year of commit activity
    Nextflow 1 GPL-3.0 0 0 0 Updated Sep 17, 2026
  • vepyr-plugins Public

    vepyr plugin manifests for cache builder

    biodatageeks/vepyr-plugins's past year of commit activity
    Python 3 Apache-2.0 0 0 1 Updated Sep 12, 2026
  • polars-bio-bench Public

    Benchmarks of various genomic ranges operations

    biodatageeks/polars-bio-bench's past year of commit activity
    Jupyter Notebook 0 Apache-2.0 1 2 0 Updated Aug 28, 2026
  • bigtools Public Forked from jackh726/bigtools

    A high-performance BigWig and BigBed library in Rust

    biodatageeks/bigtools's past year of commit activity
    Rust 0 MIT 13 0 0 Updated Aug 22, 2026

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