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@berenslab

Berens Lab @ University of Tübingen

Department of Data Science at the Hertie Institute for AI in Brain Health, University of Tübingen

Popular repositories Loading

  1. rna-seq-tsne rna-seq-tsne Public

    The art of using t-SNE for single-cell transcriptomics

    Jupyter Notebook 131 37

  2. pubmed-landscape pubmed-landscape Public

    The landscape of biomedical research

    Jupyter Notebook 124 14

  3. t-simcne t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    Python 115 14

  4. neural_data_science neural_data_science Public

    Contains programming labs and lecture notes for the lecture "Neural Data Science"

    Jupyter Notebook 112 28

  5. uneye uneye Public

    Deep neural network for eye movement detection

    Jupyter Notebook 84 31

  6. iclr-dataset iclr-dataset Public

    ICLR dataset

    Jupyter Notebook 63 14

Repositories

Showing 10 of 104 repositories
  • ssl_neuron Public Forked from marissaweis/ssl_neuron

    Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"

    berenslab/ssl_neuron's past year of commit activity
    Jupyter Notebook 0 MIT 10 0 0 Updated Oct 2, 2026
  • fundus_image_toolbox Public

    A Python package for fundus image processing.

    berenslab/fundus_image_toolbox's past year of commit activity
    Jupyter Notebook 27 MIT 6 0 2 Updated Oct 1, 2026
  • TRACE Public

    contrastive learning for timeseries (neuro) data

    berenslab/TRACE's past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 30, 2026
  • MorphoGNN Public Forked from fun0515/MorphoGNN

    Morphological embedding for single neuron with graph neuron networks

    berenslab/MorphoGNN's past year of commit activity
    Python 0 Apache-2.0 5 0 0 Updated Sep 23, 2026
  • leverage-data Public
    berenslab/leverage-data's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 20, 2026
  • jaxley_retinaretreat_workshop Public

    This repository contains the material for the Workshop "Differentiable biophysical models of the Retina", given at the Eulerlab Retina retreat Sep. 2026

    berenslab/jaxley_retinaretreat_workshop's past year of commit activity
    HTML 0 MIT 1 0 0 Updated Sep 18, 2026
  • interpretable_FM Public

    Dual-IFM: an interpretable foundation model for retinal images.

    berenslab/interpretable_FM's past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 16, 2026
  • skeliner Public

    A lightweight neuromorphological mesh skeletonizer.

    berenslab/skeliner's past year of commit activity
    Python 6 GPL-3.0 3 0 0 Updated Sep 15, 2026
  • bagnetsv2 Public

    Updated version of bagnets (bag-of-local-features neural network).

    berenslab/bagnetsv2's past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Sep 14, 2026
  • neuron_hulls Public
    berenslab/neuron_hulls's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 14, 2026
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