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1. Huising-Lab/epiRomics Huising-Lab/epiRomics Public

   An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to ident…

   R 6 2

2. encode-toolkit encode-toolkit Public

   MCP server and Claude Code plugin for the ENCODE Project: search, download and analyze ChIP-seq, ATAC-seq, RNA-seq, WGBS, Hi-C and CUT&RUN data with 20 tools, 47 skills and 7 Nextflow pipelines

   Python 21 5

3. PanelDoC PanelDoC Public

   A targeted-sequencing CNV Calling Script written in R

   R 3 1

4. targetDepth targetDepth Public

   Python