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Refactoring Branch - #79

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lucas-wilkins wants to merge 2000 commits into

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refactor_24

Draft

Refactoring Branch#79
lucas-wilkins wants to merge 2000 commits into
masterfrom
refactor_24

This pull request is big! We're only showing the most recent 250 commits

Commits on Jun 3, 2026
- First draft of SingleDataSetView
  
  summerhenson
  authored and
  krzywon
  committed
  8f10e97
- First draft for DataSetUsersView
  
  summerhenson
  authored and
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  committed
  5c6c24a
- Add filter based on username in get request body
  
  summerhenson
  authored and
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  committed
  6eee3df
- Nested metadata serialization
  
  summerhenson
  authored and
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  committed
  fcf4a7c
- Fix error in paths
  
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  committed
  47cbd8d
- Structure for dataset tests
  
  summerhenson
  authored and
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  committed
  5fdd051
- Fix filtering by username
  
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  authored and
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  390e68d
- Tests for listing datasets
  
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  authored and
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  committed
  b1b7678
- Tests for loading a dataset
  
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  7bd43c6
- Test for deleting a dataset
  
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  committed
  51b8d0f
- Fix error in permissions check
  
  summerhenson
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  committed
  4b0e5d0
- Tests for updating a dataset
  
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  authored and
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  committed
  bd9fcee
- Only allow data owner to view/manage access
  
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  authored and
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  c8826cb
- Tests for listing users with access to a dataset
  
  summerhenson
  authored and
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  committed
  eee6f0d
- Test granting access to dataset
  
  summerhenson
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  7ec9592
- Fix dataset creation
  
  summerhenson
  authored and
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  committed
  5c88067
- Set owner when data is created
  
  summerhenson
  authored and
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  committed
  1cbf256
- Disallow creating private data without an owner
  
  summerhenson
  authored and
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  committed
  af98488
- Finish tests for DataSetView
  
  summerhenson
  authored and
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  committed
  5736653
- Fix error in accessing request user from serializer
  
  summerhenson
  authored and
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  committed
  2387679
- Modify existing SingleDataSet tests
  
  summerhenson
  authored and
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  committed
  b0e8ff0
- Tests for unauthorized deletes
  
  summerhenson
  authored and
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  committed
  65a156d
- Finish DataSetAccessManagement tests
  
  summerhenson
  authored and
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  committed
  b275cf1
- Allow private data owner to change, not just public
  
  summerhenson
  authored and
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  832dac1
- Document dataset tests + one more test
  
  summerhenson
  authored and
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  ac3079f
- Documentation for datafile tests
  
  summerhenson
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  1fc96de
- Tests to make sure a user can't specify a data object id
  
  summerhenson
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  189c216
- Add operation/parameters fields to OperationTree model
  
  summerhenson
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  253393e
- Change response status to 401 for unauthenticated
  
  summerhenson
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  711cb7a
- Change tests to reflect status code change
  
  summerhenson
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  8c16660
- Skeleton of reformatted data file API
  
  summerhenson
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  committed
  f326cc1
- Fill out DataFileView methods
  
  summerhenson
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  committed
  1f584e1
- Change serializer validation to raise exception
  
  summerhenson
  authored and
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  committed
  3b863b9
- SingleDataFileView methods
  
  summerhenson
  authored and
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  committed
  54ba8f2
- DataFileUsersView methods
  
  summerhenson
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  committed
  21b4f29
- Update urls for DataFile
  
  summerhenson
  authored and
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  committed
  d800735
- Fix error in get method for file download
  
  summerhenson
  authored and
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  committed
  8b7f771
- Fix error in datafile post
  
  summerhenson
  authored and
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  committed
  080456e
- Update tests for url changes
  
  summerhenson
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  committed
  8128355
- Updates for changes to SasData class
  
  summerhenson
  authored and
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  committed
  f8c57cf
- Add published state to session model
  
  summerhenson
  authored and
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  committed
  b5b6566
- Update metadata serializers for latest changes
  
  summerhenson
  authored and
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  committed
  3cd9e59
- Update metadata model for recent changes
  
  summerhenson
  authored and
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  committed
  44f04b5
- Account for metadata changes in test
  
  summerhenson
  authored and
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  committed
  3269b76
- Changes to OperationTree model
  
  summerhenson
  authored and
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  committed
  22235fd
- Change metadata serialization in SasData serialization method
  
  summerhenson
  authored and
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  committed
  d65e5af
- Change defaults and designate allowed operations for metadata/operations models
  
  summerhenson
  authored and
  krzywon
  committed
  93d940f
- Customize creation in OperationTreeSerializer
  
  summerhenson
  authored and
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  committed
  e165a6d
- Quantity model
  
  summerhenson
  authored and
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  committed
  319269d
- Change SasData serializer to facilitate database deserialization
  
  summerhenson
  authored and
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  committed
  9748c12
- Nested quantity serialization in DataSetSerializer
  
  summerhenson
  authored and
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  committed
  11ca9a7
- Add nested quantities to tests
  
  summerhenson
  authored and
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  committed
  6c619ca
- Comment out failing sasdata tests until they get fixed
  
  summerhenson
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  committed
  326760c
- Edits to github actions/yml files
  
  summerhenson
  authored and
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  committed
  e6125d0
- Clarify logic in permissions
  
  summerhenson
  authored and
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  committed
  0af7d7b
- Test tokens valid on multiple login
  
  summerhenson
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  committed
  8e04f09
- Remove mysterious extra spaces
  
  summerhenson
  authored and
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  committed
  7e9f367
- Change operations model to refer to quantity
  
  summerhenson
  authored and
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  committed
  b88437b
- Add nested serialization for operation tree in quantity
  
  summerhenson
  authored and
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  committed
  bc8e54c
- Make operations tree optional for a quantity
  
  summerhenson
  authored and
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  committed
  00e5246
- Rename api clients in tests for clarity
  
  summerhenson
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  committed
  f0fbca3
- Restrict Django test runner to database tests
  
  summerhenson
  authored and
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  committed
  4603bf4
- String representation of units for serialization
  
  summerhenson
  authored and
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  committed
  d6eeeac
- Change and test response for changing access to a DataFile
  
  summerhenson
  authored and
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  committed
  5877827
- Add hash value to quantity serialization
  
  summerhenson
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  committed
  dd6ae8b
- Delete old method-based views
  
  summerhenson
  authored and
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  committed
  fbe04e0
- Change and test response for DataSet access management
  
  summerhenson
  authored and
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  committed
  e12b789
- Serialization for QuantityType
  
  summerhenson
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  d2a5bf8
- Empty class for operation testing
  
  summerhenson
  authored and
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  committed
  d875813
- PublishedState and Session models
  
  summerhenson
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  0c36841
- Empty classes for session views
  
  summerhenson
  authored and
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  e673116
- Basic serializer for session
  
  summerhenson
  authored and
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  committed
  fb4be4e
- Nested serializers in SessionSerializer
  
  summerhenson
  authored and
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  committed
  8e33187
- session post method
  
  summerhenson
  authored and
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  committed
  0f9e4f7
- Session access management views
  
  summerhenson
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  committed
  9027991
- urls for sessions
  
  summerhenson
  authored and
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  committed
  bca9d5e
- methods for SingleSessionView - might need to revise later
  
  summerhenson
  authored and
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  committed
  545e17c
- Switch key from OperationTree to Quantity
  
  summerhenson
  authored and
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  committed
  1728648
- Add nested OperationTree to Quantity serializer
  
  summerhenson
  authored and
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  committed
  ad108da
- Add title to Session
  
  summerhenson
  authored and
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  committed
  5e7e8c8
- Use numerical_encoding in sasdata for QuantityType serialization/deserialization
  
  summerhenson
  authored and
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  committed
  4d344ba
- Change some comments in models
  
  summerhenson
  authored and
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  committed
  9aaa583
- Fix some bugs in operation tree deserialization
  
  summerhenson
  authored and
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  committed
  a5591ee
- Test creation of operation trees
  
  summerhenson
  authored and
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  committed
  3f3d8e7
- Test creating a quantity with no operations performed on it
  
  summerhenson
  authored and
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  committed
  98e89f8
- Test creating an operation tree with an invalid operation
  
  summerhenson
  authored and
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  committed
  e4493ef
- Store quantity label as part of quantity
  
  summerhenson
  authored and
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  committed
  d354c50
- Customize OperationTree serialization from database representation
  
  summerhenson
  authored and
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  committed
  c09bd4b
- Test GET with unary operation
  
  summerhenson
  authored and
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  committed
  5cfa223
- More tests for GET with operation trees
  
  summerhenson
  authored and
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  committed
  1a48b71
- Fix minor bug in OperationTree tests
  
  summerhenson
  authored and
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  committed
  41d9b18
- Comments and planning for OperationTree testing
  
  summerhenson
  authored and
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  committed
  bde881f
- Reorganize OperationTree tests and move to dedicated file
  
  summerhenson
  authored and
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  committed
  d5b11da
- Tests for tensor product operation
  
  summerhenson
  authored and
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  committed
  71cb994
- Validate nested operations and check parameters based on type
  
  summerhenson
  authored and
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  committed
  1889498
- Test creating invalid non-top-level operation fails
  
  summerhenson
  authored and
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  committed
  9c8485d
- Separate class for invalid operation tree testing
  
  summerhenson
  authored and
  krzywon
  committed
  5641b34
- Check operation trees only in operation tree get tests
  
  summerhenson
  authored and
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  committed
  afcc0a5
- Test creating operations with missing parameters fails
  
  summerhenson
  authored and
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  committed
  3272253
- Test creating a quantity with no history
  
  summerhenson
  authored and
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  committed
  d37c38f
- Check whether deleting a dataset deletes its quantities (it doesn't) (this is kind of a problem)
  
  summerhenson
  authored and
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  committed
  a21e1ae
- Test whether deleting a dataset/its quantities deletes operations (it doesn't do this either)
  
  summerhenson
  authored and
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  committed
  13ea044
- Try switching from many-to-many to one-to-many relationship for DataSet and Quantity
  
  summerhenson
  authored and
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  committed
  cd626bb
- Change operations test setup to account for altered model relationship
  
  summerhenson
  authored and
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  committed
  015ae99
- Remove dataset id from serialized quantity
  
  summerhenson
  authored and
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  committed
  5e6b1ef
- Prevent deleting parent operations instead of cascading
  
  summerhenson
  authored and
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  committed
  c6d8d67
- Automatically delete OperationTrees when quantities are deleted
  
  summerhenson
  authored and
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  a9d7d6c
- Test nested OperationTree instances are deleted
  
  summerhenson
  authored and
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  02c44be
- Change direction of DataSet/MetaData relationship for automatic deletion
  
  summerhenson
  authored and
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  committed
  47d8006
- Change direction of Quantity/OperationTree relationship for automatic deletion
  
  summerhenson
  authored and
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  committed
  8605d8f
- Change direction of Session/DataSet relationship for automatic deletion
  
  summerhenson
  authored and
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  committed
  1a4c28e
- Change direction of Session/PublishedState relationship for automatic deletion
  
  summerhenson
  authored and
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  committed
  542d489
- Change direction of OperationTree parent-child links for automatic delete
  
  summerhenson
  authored and
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  committed
  b174b3f
- Serializer for session
  
  summerhenson
  authored and
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  committed
  2718c4b
- Get method for Sessions
  
  summerhenson
  authored and
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  committed
  ab5ad16
- Return is_public in access management GET requests
  
  summerhenson
  authored and
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  committed
  3fd6091
- Remove dataset id from MetaData instance serialization
  
  summerhenson
  authored and
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  committed
  1ea1c9e
- Test GET dataset with metadata
  
  summerhenson
  authored and
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  committed
  9d1a925
- Add comments to serializer classes
  
  summerhenson
  authored and
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  committed
  5569a32
- Fix serialization of DataSet with files
  
  summerhenson
  authored and
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  committed
  afb2a3b
- Check access to files in a dataset
  
  summerhenson
  authored and
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  committed
  b695602
- Test DataSet creation with files
  
  summerhenson
  authored and
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  committed
  0b6a5e4
- Filter files in dataset by access
  
  summerhenson
  authored and
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  committed
  5964cdf
- Test loading dataset with files
  
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  authored and
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  committed
  5730ec9
- Start session tests
  
  summerhenson
  authored and
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  committed
  2e5b3e1
- Copy session is_public value to composing datasets
  
  summerhenson
  authored and
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  committed
  281bd45
- Test listing sessions
  
  summerhenson
  authored and
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  committed
  75c64fb
- Fix bugs in DataSet creation nested in a Session
  
  summerhenson
  authored and
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  committed
  3d24ec1
- Include username and authentication status in all post responses
  
  summerhenson
  authored and
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  committed
  954ec48
- Disallow creating private sessions without an owner
  
  summerhenson
  authored and
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  committed
  9244550
- Test Session post method
  
  summerhenson
  authored and
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  committed
  58cbc1a
- Use the right serializer for sessions and return id with get
  
  summerhenson
  authored and
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  committed
  0789f1b
- Test get method for individual sessions
  
  summerhenson
  authored and
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  committed
  0cfa6ea
- Test put method for individual sessions
  
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  authored and
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  committed
  a1a4a67
- Test Session delete method
  
  summerhenson
  authored and
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  committed
  7f5a6e3
- Propagate access changes from session to composing datasets
  
  summerhenson
  authored and
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  committed
  62a7b2c
- Test Session access management
  
  summerhenson
  authored and
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  committed
  b29913c
- Return current_user as username not id
  
  summerhenson
  authored and
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  committed
  66d4e78
- Comments of session testing
  
  summerhenson
  authored and
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  committed
  756cf59
- Add field for history references to Quantity
  
  summerhenson
  authored and
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  committed
  ccbb2ae
- Serialization for Quantity variable references
  
  summerhenson
  authored and
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  committed
  6a63374
- Change serialization of QuantityHistory references to match API
  
  summerhenson
  authored and
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  committed
  3ee37ab
- Serialize Quantity operation_tree and references as history
  
  summerhenson
  authored and
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  committed
  bfdaad3
- Remove infinite serialization loop of quantities and histories
  
  summerhenson
  authored and
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  committed
  5bae9a1
- Separate model for history reference quantities
  
  summerhenson
  authored and
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  committed
  c6eaecc
- Test references in quantity history
  
  summerhenson
  authored and
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  committed
  7860fd5
- Add tests to test updating a DataSet
  
  summerhenson
  authored and
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  committed
  66be25a
- Propagate update to session is_public to datasets
  
  summerhenson
  authored and
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  committed
  9569b17
- PublishedState serialization and minor serializer create method simplifications
  
  summerhenson
  authored and
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  committed
  8223a4a
- Outline of PublishedState views
  
  summerhenson
  authored and
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  committed
  d406a43
- PublishedState list method
  
  summerhenson
  authored and
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  committed
  cb8447c
- Serializer to restrict PublishedState update to published field
  
  summerhenson
  authored and
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  committed
  dd8e493
- Post method for PublishedState
  
  summerhenson
  authored and
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  committed
  db6de1f
- Get method for single PublishedState
  
  summerhenson
  authored and
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  committed
  fef2ef1
- Update method for PublishedState
  
  summerhenson
  authored and
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  committed
  75da757
- Delete method for PublishedState
  
  summerhenson
  authored and
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  committed
  8e3407e
- Planning for PublishedState testing
  
  summerhenson
  authored and
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  committed
  54ad406
- PublishedState urls
  
  summerhenson
  authored and
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  committed
  f84cd11
- Test listing published states
  
  summerhenson
  authored and
  krzywon
  committed
  c104d0a
- Fix bugs in PublishedState creation
  
  summerhenson
  authored and
  krzywon
  committed
  b8b71bb
- Check that session doesn't already have a published state
  
  summerhenson
  authored and
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  committed
  9cc8ef0
- Test creating a published state
  
  summerhenson
  authored and
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  committed
  fec53f6
- Add fields to PublishedState get response
  
  summerhenson
  authored and
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  committed
  aae2793
- Test individual PublishedState get method
  
  summerhenson
  authored and
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  committed
  3b90189
- Test PublishedState update method
  
  summerhenson
  authored and
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  committed
  2a648f4
- Test PublishedState delete method
  
  summerhenson
  authored and
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  committed
  517c889
- Session creation example script
  
  summerhenson
  authored and
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  committed
  ec735ca
- Add models to admin interface
  
  summerhenson
  authored and
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  committed
  24cacd6
- Account for json strings in post requests
  
  summerhenson
  authored and
  krzywon
  committed
  a56c55e
- Enable session-based authentication
  
  summerhenson
  authored and
  krzywon
  committed
  dfc415a
- Comments for PublishedState tests
  
  summerhenson
  authored and
  krzywon
  committed
  bf9b3bf
- Test that metadata is required for dataset creation
  
  summerhenson
  authored and
  krzywon
  committed
  b06e244
- Minor changes suggested by Jeff
  
  summerhenson
  authored and
  krzywon
  committed
  dc84d8d
- Nested PublishedState update in Session
  
  summerhenson
  authored and
  krzywon
  committed
  8b03812
- Test nested PublishedState
  
  summerhenson
  authored and
  krzywon
  committed
  3f314b3
- Test listing published states by username
  
  summerhenson
  authored and
  krzywon
  committed
  e0c810f
- Deserialization methods for sasdata structures
  
  summerhenson
  authored and
  krzywon
  committed
  b0a8a0d
- ruff formatting changes
  krzywon
  committed
  11b203d
- merge refactor_24 into sasdata-database-cherry-pick-merge and resolve conflicts
  krzywon
  committed
  38ebaad
- ruff fixes
  krzywon
  committed
  58f703e
- ruff fixes
  krzywon
  committed
  a933ba2
- merge refactor_24 into sasdata-database-merge and resolve conflicts
  krzywon
  committed
  4e9db5a
Commits on Jun 4, 2026
Commits on Jun 15, 2026
- Refactors Quantity to have a standard error property (#215)
  Paul Sharp
  authored
  d6aeda2
Commits on Jun 29, 2026
- Refactor averaging.py and manipulations.py to use quantities (#207)
  Paul Sharp
  authored
  0d5dde8
Commits on Jul 20, 2026
- Update refactor roadmap
  Paul Sharp
  authored
  d22b23d
Commits on Jul 24, 2026
- Merge refactor_24 into sasdata-database-merged and resolve conflicts
  krzywon
  committed
  ed77cda
Commits on Jul 27, 2026
- Merge pull request #213 from SasView/sasdata-database-merged
  krzywon
  authored
  f8cefbc
Commits on Aug 20, 2026
- Add Abscissa class (#220)
  
  Paul Sharp
  and
  lucas-wilkins
  authored
  dc51023
Commits on Sep 4, 2026
- Adds new tests for the Trend class and addresses review comments from previous refactor_24_trend branch
  
  gonzalezma
  authored and
  jamescrake-merani
  committed
  80b0e96
- Restore old behaviour.
  jamescrake-merani
  committed
  ef38d6b
- [pre-commit.ci lite] apply automatic fixes for ruff linting errors
  pre-commit-ci-lite[bot]
  authored
  2d8b091
- Merge pull request #216 from SasView/refactor_24_trend_new
  krzywon
  authored
  a56acd6
Commits on Sep 8, 2026
- Get the trend value for individual data.
  jamescrake-merani
  committed
  251bf84
- Some docstrings for functions.
  jamescrake-merani
  committed
  0893a69
- If there's only zero, or one data, return true
  jamescrake-merani
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  abf349b
Commits on Sep 15, 2026
Commits on Sep 16, 2026
- Move named trend into sasdata.
  jamescrake-merani
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  f80f036
- Move this to the bottom.
  jamescrake-merani
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  4f1cb5c
- Move all test data files into a single, discoverable directory to miminize repeat files
  krzywon
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  b6d9683
- Add the test directory to the python path when running pytest
  krzywon
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- Update all unit tests to import files from the test.test_files path
  krzywon
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- import -> importer and Import -> Importer
  krzywon
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- export -> exporter and Export -> Exporter
  krzywon
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- Rename exporter package to exporters
  krzywon
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  7dcc406
- Define __all__ for data_io.importers package
  krzywon
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- Create base import method in Importer class
  krzywon
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Commits on Sep 17, 2026
Commits on Sep 18, 2026
Commits on Sep 21, 2026
- Merge pull request #227 from SasView/refactor_24_trend_improvements
  krzywon
  authored
  f5f0371
- Merge pull request #236 from SasView/refactor_24_angle_default_unit
  jamescrake-merani
  authored
  82bfa2b
Commits on Sep 22, 2026
- Add a class for magnetic.
  jamescrake-merani
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  55b353e
Commits on Sep 23, 2026
- Implemented single_line_desc.
  jamescrake-merani
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  a3a6c44
- More specific type hints.
  jamescrake-merani
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  9ea75f1
- Implement summary.
  jamescrake-merani
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- Make these fields optional.
  jamescrake-merani
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- Implement from_json.
  jamescrake-merani
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- Implement as h5 function.
  jamescrake-merani
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  5c60e3a
- Fix some metadata instantiation that broke.
  jamescrake-merani
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  e8a0a36
- More fixes to stop the tests from breaking.
  jamescrake-merani
  committed
  f1fe3e6
Commits on Sep 28, 2026
- Merge pull request #245 from SasView/refactor_24_magnetic_metadata
  jamescrake-merani
  authored
  d6b9c7b
Commits on Oct 7, 2026
- Merge branch 'refactor_24' into refactor_24_231_io_reorg
  krzywon
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  a0a0bf9
- Merge branch 'refactor_24_231_io_reorg' into refactor_24_central_io_classes
  krzywon
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  3bf1801
Commits on Oct 15, 2026
- Merge pull request #237 from SasView/refactor_24_central_io_classes
  krzywon
  authored
  28b453d
Commits on Oct 19, 2026
- Allow SasData, and SasMeasurement to be instantiated without metadata. (#247)
  
  jamescrake-merani
  and
  pre-commit-ci-lite[bot]
  authored
  ce48485

Commits

Commits on Jun 3, 2026