Commits

Commit history

1. Commits on Oct 26, 2016

   • Add some handling of "?" in seq align position. E.g. for 5dn6

     abradle

     committed
     d7f9c6dView commit details

     Copy full SHA for d7f9c6d

     Browse repository at this point
2. Commits on Sep 15, 2016

   • Merge branch 'master' into master

     abradle

     authored
     a7cfea3View commit details

     Copy full SHA for a7cfea3

     Browse repository at this point

   • Cleanup whitespace

     abradle

     committed
     8bd8f10View commit details

     Copy full SHA for 8bd8f10

     Browse repository at this point
3. Commits on Sep 14, 2016

   • Add constructors for the MMTFFilereader

     abradle

     committed
     52c3edbView commit details

     Copy full SHA for 52c3edb

     Browse repository at this point

   • Added caching functionality for MMTF

     abradle

     committed
     eb0a882View commit details

     Copy full SHA for eb0a882

     Browse repository at this point
4. Commits on Aug 16, 2016

   • Fix the doc

     abradle

     committed
     77237f3View commit details

     Copy full SHA for 77237f3

     Browse repository at this point

   • Update the outputstream to be created outside the function

     abradle

     committed
     f69b182View commit details

     Copy full SHA for f69b182

     Browse repository at this point

   • Merge branch 'master' of https://github.com/biojava/biojava

     Show description for f02290a
     abradle

     committed
     f02290aView commit details

     Copy full SHA for f02290a

     Browse repository at this point

   • Write MMTF to an OutputStream

     abradle

     committed
     0b42061View commit details

     Copy full SHA for 0b42061

     Browse repository at this point

   • Fixed the logic of working out which type of group a group is.

     Show description for 566d41c
     abradle

     committed
     566d41cView commit details

     Copy full SHA for 566d41c

     Browse repository at this point

   • Fixed the formatting and added some javadocs

     abradle

     committed
     ad85634View commit details

     Copy full SHA for ad85634

     Browse repository at this point
5. Commits on Aug 15, 2016

   • Upgrade to v1.0.0

     abradle

     committed
     0528079View commit details

     Copy full SHA for 0528079

     Browse repository at this point

   • Fixed handling of entities with no chains

     abradle

     committed
     95a409bView commit details

     Copy full SHA for 95a409b

     Browse repository at this point

   • Fixed a null pointer exception from getAtomFromRecord

     abradle

     committed
     8789bb5View commit details

     Copy full SHA for 8789bb5

     Browse repository at this point

   • Added handling of different residue types.

     abradle

     committed
     965dc23View commit details

     Copy full SHA for 965dc23

     Browse repository at this point

   • Fixed a bug in generation of disulphide bonds - including a test case.

     abradle

     committed
     636929bView commit details

     Copy full SHA for 636929b

     Browse repository at this point
6. Commits on Aug 12, 2016

   • Added support for D-GAMMA-PEPTIDE being a heatatm (as with mmCIF) not an amino.

     abradle

     committed
     ffaa1c7View commit details

     Copy full SHA for ffaa1c7

     Browse repository at this point
7. Commits on Aug 9, 2016

   • Fixed bug where bonds from struct conn records were not made for multiple models.

     abradle

     committed
     fd0c69eView commit details

     Copy full SHA for fd0c69e

     Browse repository at this point
8. Commits on Aug 4, 2016

   • Fix the logic of fixing deuterated altlocs

     abradle

     committed
     8ccdd68View commit details

     Copy full SHA for 8ccdd68

     Browse repository at this point
9. Commits on Aug 3, 2016

   • Fix a bug reading in Deuterated files using MMTF

     abradle

     committed
     b7f28ddView commit details

     Copy full SHA for b7f28dd

     Browse repository at this point
10. Commits on Jul 15, 2016

    • Remove the useMmcif from test

      Show description for 1dce7cb
      abradle

      committed
      1dce7cbView commit details

      Copy full SHA for 1dce7cb

      Browse repository at this point
11. Commits on Jul 7, 2016

    • Workaround because model numbering in Biounits is arbitrary.

      abradle

      committed
      f57e5c3View commit details

      Copy full SHA for f57e5c3

      Browse repository at this point
12. Commits on Jul 5, 2016

    • Upstream changes in writing Bioassemblies for v0.2.2 of MMTF

      Show description for 35eb065
      abradle

      committed
      35eb065View commit details

      Copy full SHA for 35eb065

      Browse repository at this point
13. Commits on Jun 16, 2016

    • Added some tests on the structures.

      abradle

      committed
      18ff76eView commit details

      Copy full SHA for 18ff76e

      Browse repository at this point

    • Fix to add chemComp info for the Basic MMTF test.

      abradle

      committed
      ee8dac9View commit details

      Copy full SHA for ee8dac9

      Browse repository at this point
14. Commits on Jun 15, 2016

    • A test that round trips mmtf files

      Show description for 03b4168
      abradle

      committed
      03b4168View commit details

      Copy full SHA for 03b4168

      Browse repository at this point

    • Fix for the MmtfStructureReader to handle altLoc being a null byte.

      abradle

      committed
      ab7603cView commit details

      Copy full SHA for ab7603c

      Browse repository at this point

    • Merge branch 'master' of github.com:biojava/biojava

      abradle

      committed
      da0202aView commit details

      Copy full SHA for da0202a

      Browse repository at this point

    • Added myself to the developers list

      abradle

      committed
      31c8911View commit details

      Copy full SHA for 31c8911

      Browse repository at this point
15. Commits on Jun 14, 2016

    • Empty ' ' inscode or altloc is now a null byte

      abradle

      committed
      690414cView commit details

      Copy full SHA for 690414c

      Browse repository at this point
16. Commits on Jun 7, 2016

    • Refactored getChain(int chainIndex) and getChain(int modelNr, int chainIndex) to getChainByIndex().

      Show description for 351464c
      abradle

      committed
      351464cView commit details

      Copy full SHA for 351464c

      Browse repository at this point
17. Commits on Jun 4, 2016

    • Merge pull request #495 from andreasprlic/master

      Show description for 7027064
      abradle

      committed
      7027064View commit details

      Copy full SHA for 7027064

      Browse repository at this point
18. Commits on Jun 3, 2016

    • Fixes to the SeqRes generation code

      abradle

      committed
      a04d4a4View commit details

      Copy full SHA for a04d4a4

      Browse repository at this point

    • Fix for sequences that go on after the group

      abradle

      committed
      07cce75View commit details

      Copy full SHA for 07cce75

      Browse repository at this point

    • Updates to parse the SeqResGroups correctly

      abradle

      committed
      3422469View commit details

      Copy full SHA for 3422469

      Browse repository at this point