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1. Commits on Jul 24, 2020

   • Merge pull request #882 from josemduarte/remove-ava

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     josemduarte

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2. Commits on Jul 4, 2020

   • Fixing test, fixing docs, bumping SNAPSHOT

     josemduarte

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3. Commits on Jun 30, 2020

   • Merge branch 'master' into #855-code-cleaning-not-related-to-issue

     paolopavan

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4. Commits on Jun 29, 2020

   • [maven-release-plugin] prepare for next development iteration

     josemduarte

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   • [maven-release-plugin] prepare release biojava-5.4.0

     josemduarte

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5. Commits on Jun 11, 2020

   • refactored code to use java 8 streams

     balaji-s

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6. Commits on May 8, 2020

   • Forgot to forward the parameter.

     paolopavan

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7. Commits on May 1, 2020

   • better typing fix

     paolopavan

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   • better typing fix

     paolopavan

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   • this cast is legal

     paolopavan

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   • added type checking

     paolopavan

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8. Commits on Apr 30, 2020

   • deleted commented out old code

     paolopavan

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9. Commits on Apr 28, 2020

   • deep substitution of implementations with interfaces

     paolopavan

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10. Commits on Apr 27, 2020

    • again, substituted implementation with interface

      paolopavan

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    • using interfaces instead of implementations

      paolopavan

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    • combined exceptions

      paolopavan

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    • formatting

      paolopavan

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    • replaced obsolete StringBuffer with StringBuilder. It is much faster.

      paolopavan

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    • better log management

      paolopavan

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    • deleted un needed

      paolopavan

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    • reduced complexity of this monster

      paolopavan

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    • used more appropriate property comment

      paolopavan

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    • Refactored this, no need explicit cast if DBReferenceInfo is needed

      paolopavan

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    • deleted redundant stuff

      paolopavan

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    • This is a bug

      paolopavan

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    • equals method must check the class of the object.

      paolopavan

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    • If read, a section exists. This is redundant

      paolopavan

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    • Those are not used

      paolopavan

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    • static is better, wastes less memory

      paolopavan

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    • unused

      paolopavan

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    • never thrown exception

      paolopavan

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    • maybe better to delete, can be recreated eventually needed

      paolopavan

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    • better management of not implemented methods

      paolopavan

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    • this can be final

      paolopavan

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    • increased type checking

      paolopavan

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