GitHub Action to Setup EESSI

GDM Science Skills to speed up agentic scientific workflows with better grounding and higher token efficiency. Integrate insights from AlphaGenome, AFDB, UniProt and 30+ other databases and tools.

Scripts and files supplamntry metrial for Beyond Diffusion: Bayesian Learning Strategies in Single-Cell Life

C++ code and R scripts used for Pen & Flatt (2020): Asymmetry, Division of Labour and the Evolution of Ageing in Multicellular Organisms, submitted for publication to Philosophical Transactions of …

code to generate data and figures for "Topological Constraints In The Origin of Adaptive Specialization"

Cross-platform GUI written in Rust using ADB to debloat non-rooted android devices. Improve your privacy, the security and battery life of your device.

Firefox extension for sharing (med/bio)Rxiv preprints on BlueSky

Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.

Foreign Contamination Screening caller scripts and documentation

Simulating paired-end short sequencing reads from circular and linear genomes

profile basd Illumina pair-end Reads Simulator

Protein function prediction through latent tensor reconstruction

in silico Whole Genome Sequencer and Analyzer

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

⚡ ♒ Rapid prokaryotic genome annotation

This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.

NCBI Prokaryotic Genome Annotation Pipeline

Generate simulated illumina sequence reads from a reference sequence

NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.

A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.

A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS seque…

Chris Titus Tech's Linux Toolbox - Linutil is a distro-agnostic toolbox designed to simplify everyday Linux tasks.

Genome assembly evaluation tool

SKESA assembler

ML approach to discerning "best" Open Reading Frames (ORFs) from "noisy" transcriptomic data. Intended for identification of lineage-specific genes and decontamination from scRNA-seq assemblies.