Applied Data Scientist at Graph Therapeutics. Previously a postdoc at Rendeiro Lab, CeMM, building open-source Python tools for computational pathology, spatial omics and scientific visualization.
LazySlide + wsidata Whole-slide image analysis for digital pathology, scverse-native, with the data and IO layer underneath |
Marsilea + legendkit Composable visualizations (complex heatmaps, UpSet, OncoPrint…) and painless matplotlib legends |
| More | ||
|---|---|---|
| python-hmr | Hot module reload for Python | |
| sciink | Fast Inkscape extensions for scientific figures, in Rust | |
| Aquila | Spatial single-cell database and analysis platform |
Earlier: SpatialTis · SpatialEntropy
- LazySlide: accessible and interoperable whole-slide image analysis. Zheng Y, et al. Nature Methods (2026) · DOI
- Histological aging signatures for monitoring tissue-specific aging and disease. Abila E, Buljan I, Zheng Y, et al. Nature Medicine (2026) · DOI
- Marsilea: an intuitive generalized paradigm for composable visualizations. Zheng Y, et al. Genome Biology (2025) · DOI
- Aquila: a spatial omics database and analysis platform. Zheng Y, et al. Nucleic Acids Research (2023) · DOI
→ Full list on Google Scholar