Melclic
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scientific-agent-skills Public
Forked from K-Dense-AI/scientific-agent-skillsTurn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 175,000+ scientists worldwide. 163 ready-to-use validated skills plus 100+ scientific databases covering bio…
Python MIT License UpdatedOct 7, 2026 -
mob-suite Public
Forked from phac-nml/mob-suiteMOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Python Apache License 2.0 UpdatedOct 7, 2026 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedSep 25, 2026 -
BioPathOpt Public
This project provides a simulation framework for synthetic biology and metabolic engineering, with a focus on the analysis of metabolic models for the production of novel compounds.
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FluxGAT Public
Forked from kierensharma/FluxGATFluxGAT introduces a graph neural network (GNN) model designed to predict gene essentiality by utilising graphical representations derived from flux sampling data. This approach effectively bypasse…
Python UpdatedMar 5, 2026 -
metaxime Public
Collection of projects for the analysis of metabolic pathways in cellular metabolisms
TypeScript GNU General Public License v3.0 UpdatedJan 24, 2026 -
COBRA-k Public
Forked from klamt-lab/COBRA-kA Python package for "classic" Constraint-Based Reconstruction and Analysis (COBRA) and the new COBRA with kinetics (COBRA-k). Link to documentation:
Python UpdatedDec 22, 2025 -
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melclic.github.io Public
My own landing page
Ruby GNU General Public License v3.0 UpdatedDec 6, 2025 -
retrosynthesis Public
Whole retrosynthesis pipeline using RetroRules, RetroPath2.0 and RP2paths
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nextflow-api Public
Forked from CNIC-Proteomics/nextflow-apiNextflow-API is a web application and REST API for submitting and monitoring Nextflow pipelines on a variety of execution environments.
Python MIT License UpdatedDec 1, 2025 -
repeat-masker-nextflow Public
Forked from VEuPathDB/repeat-masker-nextflownextflow workflow to modernize current repeatMasker workflow steps
Perl Apache License 2.0 UpdatedNov 21, 2025 -
EDTA Public
Forked from GallVp/EDTAA Nextflow Implementation of Extensive de-novo TE Annotator (EDTA)
Perl GNU General Public License v3.0 UpdatedNov 21, 2025 -
nf-LO Public
Forked from evotools/nf-LOA Nextflow workflow to generate lift over files for any pair of genomes
Nextflow MIT License UpdatedNov 19, 2025 -
intersectomics Public
Package to study time series (or other series) multi-omics patterns of expresssion with replicates
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deep Public
Forked from lidawei1975/deepANN based NMR peak picker with python wrapper
C++ GNU General Public License v3.0 UpdatedMay 11, 2025 -
plate_predictor Public
Machine learning project that analyzes different models and generates suggestions
HTML UpdatedDec 2, 2024 -
OmicsStatsLib Public
Library to perform omics data processing and basic statistical analysis
MIT License UpdatedMay 25, 2024 -
explore_machine_learning Public
Just a series of notebook to explore machine learning methods with biological sciences examples
Jupyter Notebook UpdatedJan 14, 2024 -
RnaSeqSampleSize Public
Forked from slzhao/RnaSeqSampleSizeContinue the development and maintenance of the package RnaSeqSampleSize
R UpdatedFeb 1, 2023 -
sktime Public
Forked from sktime/sktimeA unified framework for machine learning with time series
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 21, 2022 -
dash-cytoscape Public
Forked from plotly/dash-cytoscapeInteractive network visualization in Python and Dash, powered by Cytoscape.js
Python MIT License UpdatedMar 30, 2022 -
smilesDrawer Public
Forked from reymond-group/smilesDrawerA small, highly performant JavaScript component for parsing and drawing SMILES strings. Released under the MIT license.
JavaScript MIT License UpdatedMar 25, 2022 -
stats_explore Public
Just personal project to explore different statistical methods
Jupyter Notebook UpdatedAug 30, 2021 -
Searchlight2 Public
Forked from Searchlight2/Searchlight2Automated bulk RNA-seq exploration and visualisation using dynamically generated R-scripts.
Python Other UpdatedMay 18, 2021 -
GSEApy Public
Forked from zqfang/GSEApyGene Set Enrichment Analysis in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 16, 2021 -
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RetroPath2 Public
Forked from galaxy-synbiocad/RetroPath2Perform retrosynthesis to calculate possible metabolic routes from a collection of sink files to a target
Python MIT License UpdatedNov 24, 2020 -
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interspersed_repeat Public
Find the interspersed repeats in a DNA sequence that are 9bp or larger
1 UpdatedSep 1, 2020