ManuSetty
Follow
-
HarmonyRefactor Public
Forked from dpeerlab/HarmonyHarmony framework for connecting scRNA-seq data from discrete time points
Jupyter Notebook GNU General Public License v2.0 UpdatedDec 1, 2025 -
SEACells Public
Forked from christinedien/SEACellsJupyter Notebook GNU General Public License v2.0 UpdatedApr 5, 2022 -
SeqGL Public
SeqGL is a group lasso based algorithm to extract TF sequence signals from ChIP, DNase and ATAC-seq profiles
-
-
wishbone Public archive
Wishbone is an algorithm to align cells along developmental trajectories with branches
-
glmpca-py Public
Forked from willtownes/glmpca-pygeneralized principal component analysis (GLM-PCA) implemented in python
Python GNU Lesser General Public License v3.0 UpdatedOct 14, 2019 -
Palantir Public archive
Single cell trajectory detection
-
dynmethods Public
Forked from dynverse/dynmethodsA collection of over 40 trajectory inference methods within a common interface
-
scanpy Public
Forked from scverse/scanpySingle-Cell Analysis in Python. Scales to >1M cells.
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 3, 2018 -
ChIPKernels Public
ChIPKernels is an R package for building different string kernels used for DNA Sequence analysis.