Issues

• Should HPCell work with mouse data?

  MangiolaLaboratory/HPCell#106 · Filter by author gaoyingnan-academic opened on Aug 11, 2026

• Establish Docker image for installation-'free' use of HPCell

  MangiolaLaboratory/HPCell#97 · Filter by author gaoyingnan-academic opened on May 14, 2026
  

• Installation fails

  MangiolaLaboratory/HPCell#95 · Filter by author stemangiola opened on Sep 16, 2025
  1

  

• filter TCR, BCR, Ig from references before celltyping

  MangiolaLaboratory/HPCell#94 · Filter by author stemangiola opened on Apr 4, 2025
  1

  

• rename argument in empty_droplet_threshold function

  MangiolaLaboratory/HPCell#93 · Filter by author myushen opened on Mar 20, 2025
  

• Generalise to arbitrary number of assays

  MangiolaLaboratory/HPCell#92 · Filter by author stemangiola opened on Dec 18, 2024
  

• workspace_on_error starting message

  MangiolaLaboratory/HPCell#88 · Filter by author stemangiola opened on Dec 4, 2024

• complete annotation consensus

  MangiolaLaboratory/HPCell#80 · Filter by author stemangiola opened on Sep 18, 2024
  1

• allow ellipse ... for every module to pass the arguments to the underlying methods

  MangiolaLaboratory/HPCell#79 · Filter by author stemangiola opened on Sep 18, 2024

• Concern of mapping input genes with EnsDb.Hsapiens.v86

  MangiolaLaboratory/HPCell#73 · Filter by author myushen opened on Jul 30, 2024

• Grammar feedback

  MangiolaLaboratory/HPCell#66 · Filter by author multimeric opened on Jul 1, 2024

• Add dimensionality reduction report

  MangiolaLaboratory/HPCell#59 · Filter by author susansjy22 opened on May 28, 2024
  1

• Add microbulk to the pipeline

  MangiolaLaboratory/HPCell#53 · Filter by author stemangiola opened on Apr 10, 2024

• Add Cellbender for removal of ambient RNA

  MangiolaLaboratory/HPCell#20 · Filter by author stemangiola opened on Aug 21, 2023
  1

  

• Add reporting

  MangiolaLaboratory/HPCell#19 · Filter by author stemangiola opened on Aug 21, 2023
  

• Add annotation functionality to the pipeline

  MangiolaLaboratory/HPCell#18 · Filter by author stemangiola opened on Aug 21, 2023
  

• branches explained & current status of the pipeline

  documentation
  MangiolaLaboratory/HPCell#8 · Filter by author eroesti opened on Nov 13, 2022

• comments to add to instructions

  MangiolaLaboratory/HPCell#6 · Filter by author eroesti opened on Nov 4, 2022