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1. Commits on Jan 11, 2017

   • Update README with full BioJava logo

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   • Add full name BioJava logo

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2. Commits on Sep 20, 2016

   • Merge pull request #4 from josemduarte/superpose

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3. Commits on Sep 19, 2016

   • Merge branch 'svdsuperimpIssue' into superpose

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   • Documentation and minor fix

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   • Redo the PR #576 re-use code into a method

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   • Fix bug in centroid calculation SuperPositionSVD #588

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4. Commits on Sep 14, 2016

   • Address jose comment on #558

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5. Commits on Sep 13, 2016

   • Fix bug with dihedral axis calculation #558

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6. Commits on Sep 12, 2016

   • Fix bug in superposeAndTransform method SuperPositions

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   • Remove tests that require String comparisons with floats

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   • Fix compilation errors from SuperPosition interface change #558

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   • Merge remote-tracking branch 'main/master' into superpose

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   • Port methods from Calc to new Matrices class #558

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7. Commits on Sep 9, 2016

   • Modifications from the SuperPosition changes w compile errors

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   • Modify test for all SuperPosition algorithms #558

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   • Implement a static class with methods for superposition #558

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   • All superposition algorithms implement the SuperPosition interface

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   • Create the SuperPosition interface and abstract class #558

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   • Rename SVD Superposition algorithm #558

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   • Rename Class for quaternion-based superposition #558

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8. Commits on Sep 8, 2016

   • Remove some unimplemented methods in phylo

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   • Merge alignment and phylo modules #413

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9. Commits on Sep 1, 2016

   • Move long tests to the intergationtest package

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10. Commits on Aug 31, 2016

    • Fix Calc centroid and center of mass documentation

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11. Commits on Aug 30, 2016

    • Small fix TestQsAlign

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    • Small change to SuperpositionQCP test

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    • Merge branch 'master' into quatalign

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12. Commits on Aug 8, 2016

    • Small fix for the last commit

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    • Document, test and fix relative orientation method

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    • Merge branch 'master' into quatalign

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    • Improve documentation of UnitQuaternions.relativeOrientation

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13. Commits on Aug 5, 2016

    • Helper method to return the list of subunits of a QuatSymmetryResult

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    • Helper method for aligned atoms of a subunit in QsAlign

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    • Small fix to QuatSymmetry test

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