ErinWeisbart
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JUMP_lite Public
Forked from afermg/JUMP_liteCode and release documentation for JUMP-Lite, a compact, analysis-ready subset of the JUMP Cell Painting dataset for benchmarking cell-image representations.
Python MIT License UpdatedAug 5, 2026 -
pycytominer Public
Forked from cytomining/pycytominercytominer python package
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 22, 2026 -
nf-core-test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedApr 2, 2026 -
profiling-handbook Public
Forked from cytomining/profiling-handbookImage-based Profiling Handbook
R Creative Commons Zero v1.0 Universal UpdatedMar 30, 2026 -
jump-cellpainting-datasets Public
Forked from jump-cellpainting/datasetsImages and other data from the JUMP Cell Painting Consortium
Shell BSD 3-Clause "New" or "Revised" License UpdatedNov 24, 2025 -
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profiling-recipe Public
Forked from cytomining/profiling-recipeImage-based Profiling Recipe
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 9, 2025 -
cytodata-hackathon-2018 Public
Forked from cytodata/cytodata-hackathon-2018Ideas, code and results of the 2018 CytoData hackathon
Jupyter Notebook MIT License UpdatedJan 22, 2024 -
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Bikeshed Other UpdatedApr 28, 2023 -
cytodata-hackathon-base Public
Forked from AllenCell/cytodata-hackathon-baseJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedOct 20, 2022 -
pooled-cell-painting-profiling-template Public template
Forked from broadinstitute/pooled-cell-painting-profiling-template🛠️ Use me to version control Pooled Cell Painting data and processing pipelines
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 15, 2020 -
pooled-cp-profiling-recipe Public
Forked from broadinstitute/pooled-cell-painting-profiling-recipe👩🍳 Recipe repository for image-based profiling of Pooled Cell Painting experiments
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 24, 2020