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Assaydev persite #185

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Merged
ErinWeisbart merged 5 commits into from
Jun 30, 2026
Merged

Assaydev persite #185

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d6b4b25
add assaydev_persite
ErinWeisbart Dec 3, 2024
323edec
typo
ErinWeisbart Dec 3, 2024
b8d5898
add to docs
ErinWeisbart Dec 3, 2024
ab41b74
typo
ErinWeisbart Dec 4, 2024
cd1ef50
Convert site to string in metadata formatting
ErinWeisbart Feb 2, 2026
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Convert site to string in metadata formatting
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@ErinWeisbart
ErinWeisbart authored Feb 2, 2026
commit cd1ef5041380e65619ecf5c26d246fb4c947c22b
8 changes: 4 additions & 4 deletions run_batch_general.py
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Expand Up @@ -443,7 +443,7 @@ def run_batch_general(
for eachcol in columns:
for site in sites:
templateMessage_ad = {
"Metadata": f"Metadata_Plate={plate},Metadata_Well={eachrow}{int(eachcol):{well_format}},Metadata_Site={site}",
"Metadata": f"Metadata_Plate={plate},Metadata_Well={eachrow}{int(eachcol):{well_format}},Metadata_Site={str(site)}",
"pipeline": posixpath.join(pipelinepath, pipeline),
"output": outpath,
"input": inputpath,
Expand All @@ -454,7 +454,7 @@ def run_batch_general(
for well in wells:
for site in sites:
templateMessage_ad = {
"Metadata": f"Metadata_Plate={plate},Metadata_Well={eachwell},Metadata_Site={site}",
"Metadata": f"Metadata_Plate={plate},Metadata_Well={eachwell},Metadata_Site={str(site)}",
"pipeline": posixpath.join(pipelinepath, pipeline),
"output": outpath,
"input": inputpath,
Expand All @@ -470,7 +470,7 @@ def run_batch_general(
for eachcol in columns:
for site in sites:
templateMessage_ad = {
"Metadata": f"Metadata_Plate={plate},Metadata_Well={eachrow}{int(eachcol):{well_format}},Metadata_Site={site}",
"Metadata": f"Metadata_Plate={plate},Metadata_Well={eachrow}{int(eachcol):{well_format}},Metadata_Site={str(site)}",
"pipeline": posixpath.join(batchpath, batchfile),
"output": outpath,
"input": inputpath,
Expand All @@ -481,7 +481,7 @@ def run_batch_general(
for eachwell in wells:
for site in sites:
templateMessage_ad = {
"Metadata": f"Metadata_Plate={plate},Metadata_Well={eachwell},Metadata_Site={site}",
"Metadata": f"Metadata_Plate={plate},Metadata_Well={eachwell},Metadata_Site={str(site)}",
"pipeline": posixpath.join(batchpath, batchfile),
"output": outpath,
"input": inputpath,
Expand Down