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7110578
Update run.py
bethac07 May 13, 2020
19964e9
Delete fabfile.py
bethac07 May 13, 2020
bb81d2e
Move previous fab functions into run.py
bethac07 May 13, 2020
d15f63c
Debugging from lambda
bethac07 May 15, 2020
13058a4
tabs to spaces, issues/112
bethac07 Nov 3, 2020
e680795
merged in master
bethac07 Nov 3, 2020
dc73956
issues/105
bethac07 Nov 3, 2020
49a5d15
issues/110, fix passing USE_PLUGINS
bethac07 Nov 3, 2020
f307e29
fix tabs to spaces in run.py
bethac07 Nov 3, 2020
c4cb09c
tab/space error in run_batch_general
bethac07 Nov 3, 2020
e2ec8a0
issues/107
bethac07 Nov 3, 2020
a779061
issues/107
bethac07 Nov 3, 2020
50fe2f4
add 'cheapest' mode to monitor
bethac07 Nov 3, 2020
7ee2149
get credentials working
bethac07 Nov 3, 2020
e05c9d1
move machine type/price/date out of fleet file
bethac07 Nov 3, 2020
e6ded49
move machine type/price/date out of fleet file
bethac07 Nov 3, 2020
de17c9f
support running of monitor in cheapest mode
bethac07 Nov 3, 2020
318d78a
fix indentation in CHECK_IF_DONE
bethac07 Nov 3, 2020
dee8ea3
move cpDone
bethac07 Nov 3, 2020
5264a14
don't move done file, you still need to check it
bethac07 Nov 3, 2020
6d9e2ab
don't move done file, you still need to check it
bethac07 Nov 3, 2020
3deaa20
fix cmdstm for batch files
bethac07 Nov 3, 2020
0a0b27b
fixes to make log export work
bethac07 Nov 4, 2020
08e7fe8
python 3 support in run.py
bethac07 Nov 4, 2020
bc0afc6
move Python2 files to their own folder
bethac07 Nov 4, 2020
33a3a23
pin watchtower to last python2 version
bethac07 Nov 4, 2020
6e3c36f
support for CellProfiler 4
bethac07 Nov 4, 2020
54f77d0
fix alarm time designation
bethac07 Nov 4, 2020
186af22
Update README.md
bethac07 Nov 4, 2020
14c444e
Update requirements.txt
bethac07 Nov 4, 2020
dcfa1f7
Update LICENSE
bethac07 Nov 4, 2020
e0fcb72
Add a bit about run_batch_general
bethac07 Nov 5, 2020
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Update README.md
  • Loading branch information
bethac07 authored Nov 4, 2020
commit 186af2207457b9378f514e1e72dd1b49027c6a59
8 changes: 3 additions & 5 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@ job. When the job is completed, the code is also able to stop resources and clea
Edit the config.py file with all the relevant information for your job. Then, start creating
the basic AWS resources by running the following script:

$ fab setup
$ python run.py setup

This script intializes the resources in AWS. Notice that the docker registry is built separately,
and you can modify the worker code to build your own. Anytime you modify the worker code, you need
Expand All @@ -48,10 +48,8 @@ with the following command:

$ python run.py startCluster files/exampleFleet.json

The exampleFleet.json file has to be updated to determine the type of EC2 instances that you want
and how much you are willing to pay for each machine-hour. Make sure to adjust the values in this
json file according to your application. After the cluster is ready, the code informs you that
everything is setup, and saves the spot fleet identifier in a file for further references.
After the cluster is ready, the code informs you that everything is setup, and saves the spot fleet identifier
in a file for further reference.

### Step 4
When the cluster is up and running, you can monitor progress using the following command:
Expand Down