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1. Commits on Apr 14, 2013

   • Update hints.md

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   • Update hints.md

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2. Commits on Apr 12, 2013

   • Merge pull request #3 from brandstaetter/devel

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3. Commits on Apr 6, 2013

   • added suggestions for code style

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4. Commits on Apr 5, 2013

   • added suggestions for code style

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   • added suggestions for code style

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5. Commits on Apr 4, 2013

   • Merge pull request #2 from brandstaetter/devel

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   • Update and rename readme.txt to readme.md

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   • added .gitignore

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6. Commits on Mar 15, 2012

   • deleted genome.parsers.fastq and associated test classes (duplicated, they are in their own package, sequencing)

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7. Commits on Mar 12, 2012

   • undid more unnecessary reformatting that made the code harder to read in the Fastq test cases, also removed some unnecessary import statements

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   • undid some unnecessary reformatting that made the code harder to read in FastqBuilderTest.java

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   • moved fastq classes from biojava3.sequencing.io.fastq to biojava3.genome.parsers.fastq

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8. Commits on Mar 8, 2012

   • added sanity check to Alignments, throws IllegalArgumentException if compound sets mismatch (instead of just failing silently)

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9. Commits on Feb 27, 2012

   • added another method to QualityFeature; also some javadoc

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10. Commits on Feb 26, 2012

    • implemented a new Fastq Reader/Writer for the new Illumina Fastq Formatting (according to Wikipedia it's version 1.8, new this month

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    • fixed a typo in QualityFeature

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    • added a QualityFeature to hold quality information in DNASequences

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11. Commits on Feb 24, 2012

    • unified indentation in pom.xml; added some Test cases for DNA Alignments

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