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1. Commits on Sep 7, 2018

   • Explicit jaxb dependencies so that biojava can compile/run in all jdks up to 11

     josemduarte

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   • Merge branch 'master' into java9

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2. Commits on Sep 5, 2018

   • Change download chemcomp log to WARN

     lafita

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3. Commits on Aug 29, 2018

   • [maven-release-plugin] prepare for next development iteration

     josemduarte

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   • [maven-release-plugin] prepare release biojava-5.1.0

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   • Not altering the exceptions in signature, keeping what we had with better logging

     josemduarte

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   • Fixing #784

     josemduarte

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4. Commits on Aug 28, 2018

   • Fixed part of a test and tagged it as Ignore

     josemduarte

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   • Fixing issue #797 and better docs and naming

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5. Commits on Aug 24, 2018

   • Merge pull request #794 from biocryst/stoichiometry

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     josemduarte

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   • Merge pull request #793 from biocryst/smallfixes

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     josemduarte

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6. Commits on Aug 21, 2018

   • transformation ordering fix: total order required for the comparator

     

     Dmytro Guzenko

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   • fix for cloning with null seqres groups

     

     Dmytro Guzenko

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7. Commits on Aug 16, 2018

   • Logger string formatting changed to brackets (faster execution).

     

     Dmytro Guzenko

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8. Commits on Jul 29, 2018

   • Code Refactoring to minimize dublicate code

     MikkelVestergaard

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   • Merge branch 'issue712'

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9. Commits on Jul 28, 2018

   • Implemented bond-cloning in group-elements

     MikkelVestergaard

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10. Commits on Jul 13, 2018

    • Merge branch 'master' into more-altloc-problems

      josemduarte

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    • Implementing @sbliven suggestions

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    • Switch ftp.ebi.ac.uk URLs to use HTTP.

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      sbliven

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      josemduarte

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11. Commits on Jun 25, 2018

    • Docs

      josemduarte

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12. Commits on Jun 24, 2018

    • Fixing issue with duplicate altlocs in writing to mmcif. Improved docs.

      josemduarte

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    • Some fixes in altloc test and 2 additions

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13. Commits on Jun 18, 2018

    • Make BioJava compile under java9

      sbliven

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14. Commits on Jun 15, 2018

    • Fix test failure due to PDB change

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      sbliven

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15. Commits on Jun 8, 2018

    • Merge branch 'bugfixes-4.2'

      sbliven

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16. Commits on Jun 4, 2018

    • Improving CathInstallation logging

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      sbliven

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17. Commits on May 22, 2018

    • Next dev cycle for master

      josemduarte

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18. Commits on May 21, 2018

    • Fix for #770, use LinkedHashMaps to keep order of biological assembly

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      pwrose

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19. Commits on May 16, 2018

    • Revert "Fixes #771, commented out test case that fails due to PDB data error."

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      pwrose

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    • Fixes #770, bioassemblies are now kept in the same order as read in from

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      pwrose

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    • Fixes #771, commented out test case that fails due to PDB data error.

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20. Commits on May 11, 2018

    • [maven-release-plugin] prepare for next development iteration

      josemduarte

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    • [maven-release-plugin] prepare release biojava-5.0.1

      josemduarte

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    • Converting some old loggers to slf4j. Clean up.

      josemduarte

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