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1. Commits on Mar 12, 2018

   • Removing deprecations from v4

     josemduarte

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2. Commits on Sep 8, 2017

   • Fixing phosphosite urls and changing default url timeout to 30s

     josemduarte

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3. Commits on Nov 30, 2016

   • moving to Java 7

     andreasprlic

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   • now also accepting old header line

     andreasprlic

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4. Commits on Nov 29, 2016

   • fix for #610

     andreasprlic

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5. Commits on Aug 8, 2016

   • new utility classes to detect if a Group is polymeric, an amino acid, or a nucleotide group.

     andreasprlic

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6. Commits on Jun 10, 2016

   • Merge pull request #502 from andreasprlic/master

     Show description for 3509775
     josemduarte

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   • distance have to be looked up by element name, not atom name

     andreasprlic

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7. Commits on Jun 9, 2016

   • Adds a new definitions file so the code can correctly detect Metal bonds. Slightly more efficient representation of standard amino acids.

     andreasprlic

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8. Commits on Jun 5, 2016

   • squid:S2131 - Primitives should not be boxed just for String conversion

     

     Mohamed Ezzat

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9. Commits on Jun 1, 2016

   • Allowing detection of PTMs that interact with Terbium, as reported by @epeisach . Also less verbose PTM junit test.

     andreasprlic

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10. Commits on May 11, 2016

    • Fixed modfinder tests

      josemduarte

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11. Commits on May 4, 2016

    • Fix the compile errors - mainly by changin "setChainId" "setChainName"

      abradle

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12. Commits on Mar 9, 2016

    • More whitespace fixes

      sbliven

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    • Converting initial spaces to tabs.

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      sbliven

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    • Remove trailing whitespace globally from .java files

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      sbliven

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13. Commits on Oct 6, 2015

    • Converting all line endings to Unix.

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      sbliven

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14. Commits on Jan 30, 2015

    • Refactoring of all package names according to #245 #242 #240

      andreasprlic

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15. Commits on Jan 29, 2015

    • Ran Optimize Imports across the whole project.

      andreasprlic

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    • Major refactoring of package names in accordance with #245 #242 #240

      andreasprlic

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