LLM-based ontological extraction tools, including SPIRES

The lean application framework for Python. Build sophisticated user interfaces with a simple Python API. Run your apps in the terminal and a web browser.

Python tool to monitor RSS feeds and download the linked content.

Machine learning-based approach for the inference of gene regulatory networks from expression data.

Examples for working with and extending Stardog

KnetMaps: a BioJS component to visualize biological knowledge networks

Scala GraphQL implementation

For BioHackathon Europe 2021.

The source for the Linux kernel used in Windows Subsystem for Linux 2 (WSL2)

🚀 Open source tools for GraphQL. Central repo for discussion.

The industry-leading GraphQL client for TypeScript, JavaScript, React, Vue, Angular, and more. Apollo Client delivers powerful caching, intuitive APIs, and comprehensive developer tools to accelera…

🌍  Spec-compliant and production ready JavaScript GraphQL server that lets you develop in a schema-first way. Built for Express, Connect, Hapi, Koa, and more.

Low RAM Knowledge Graphs for Knetminer

Schema and generated objects for biolink data model and upper ontology

Python wordcloud example for knetminer viz

Documentation for the COVID-19 KnetGraph SPARQL and Cypher endpoints

Rebuild of AskOmics

COVID-19 Biohackathon April 5-11 2020

Parent POM for Knetminer projects, also containing common files.

Suite of tools for deploying and training deep learning models using the JVM. Highlights include model import for keras, tensorflow, and onnx/pytorch, a modular and tiny c++ library for running mat…

NLP framework for JVM languages.

jBox is a jQuery plugin that makes it easy to create customizable tooltips, modal windows, image galleries and more.

A CX to Cytoscape JS library

Knetminer-customised version of LODEStar

Issue tracker, technical wiki, and example markup

The Bio Knowledge Network, powering knowledge graphs released by the Knetminer project

The Cytoscape.js blog, using Github pages and Jekyll

Schema.org - schemas and supporting software

A clone of the Knetminer wiki to develop and test docs into a separated branch

FASTQ sequence quality visualisation with Emoji