OVESEG
This is the released version of OVESEG; for the devel version, see OVESEG.
All Bioconductor versions of OVESEG
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9
OVESEG-test to detect tissue/cell-specific markers
Bioconductor version: 3.23 · Package version: 1.28.0
An R package for multiple-group comparison to detect tissue/cell-specific marker genes among subtypes. It provides functions to compute OVESEG-test statistics, derive component weights in the mixture null distribution model and estimate p-values from weightedly aggregated permutations. Obtained posterior probabilities of component null hypotheses can also portrait all kinds of upregulation patterns among subtypes.
Author: Lulu Chen <luluchen at vt.edu>
Maintainer: Lulu Chen <luluchen at vt.edu>
Citation
From within R, enter citation("OVESEG"):
Lulu Chen. OVESEG: OVESEG-test to detect tissue/cell-specific markers. doi:10.18129/B9.bioc.OVESEG, R package version 1.28.0, https://bioconductor.org/packages/OVESEG.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OVESEG")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.28.0 |
| License | GPL-2 |
| Bug Reports | https://github.com/Lululuella/OVESEG |
| System Requirements | C++11 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.9 (R-3.6) (7 years) |
| Downloads rank | 1411 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | CellBiology, GeneExpression, MultipleComparison, Software |
| Package Short Url | https://bioconductor.org/packages/OVESEG/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OVESEG")| OVESEG User Manual | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | OVESEG_1.28.0.tar.gz |
| Windows binary (x86_64) | OVESEG_1.28.0.zip |
| macOS binary (arm64) | OVESEG_1.28.0.tgz |
| macOS binary (x86_64) | OVESEG_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OVESEG |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OVESEG |
| Package Downloads Report | Download Stats |