Cyril Matthey-Doret @[email protected]

@cmdoret

Data Science Engineer @SDSCdatascience | Genomics, Reproducibility, Open data | Previously @institutpasteur and @UNIL

Lausanne, Switzerland

github.com/cmdoret

Joined May 2011

266 Following

137 Followers

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Cyril Matthey-Doret @[email protected]
@cmdoret
Oct 28, 2021
Our preprint on the chromosome-level assembly and analysis of 2 Acanthamoeba castellanii genomes is online ! We used this assembly to look at changes in chromosome folding during infection by Legionella #instagraal
bioRxiv Genomics
@biorxiv_genomic
Oct 27, 2021
Chromosome-scale assemblies of Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection-related ... biorxiv.org/cgi/content/sh… #biorxiv_genomic
Cyril Matthey-Doret @[email protected]
@cmdoret
May 20, 2021
Just found out about @FrameworkPuter repairable and upgradeable laptops, looks awesome ! #RightToRepair #ewaste
Cyril Matthey-Doret @[email protected]
@cmdoret
Dec 2, 2020
@JacquesSerizay and I will be giving an online course on Data analysis in genomics, focusing on ChIP-seq, ATAC-seq and Hi-C. Registrations are open :)
Physalia-courses@ONLINE
@Physacourses
Dec 1, 2020
Interested in gene regulation and epigenomics? Have a look at out new course w/ @cmdoret and @JacquesSerizay in January (11-15 January) We will cover a broad range of topics from ChIP-seq and ATAC-seq data to the analysis of the chromatin 3D structure physalia-courses.org/courses-worksh…
Cyril Matthey-Doret @[email protected]
@cmdoret
Nov 16, 2020
The Chromosight paper is officially out ! Super happy to have my first PhD paper published :) Check it out if you want to detect patterns in Hi-C contact maps: github.com/koszullab/chro… Available through bioconda and pip as well nature.com/articles/s4146…
GitHub - koszullab/chromosight: Computer vision based program for pattern recognition in chromosome...
From github.com
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Cyril Matthey-Doret @[email protected]
@cmdoret
Mar 11, 2020
Does anybody know of an experimental Hi-C dataset with manually annotated loop positions ? (Looking for a non-synthetic dataset for benchmarking)