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Here are a couple different ways that I invoke runtests: # #serial, 2d_Poisson # ~/Trilinos/development-branch/Trilinos/commonTools/test/utilities/runtests --trilinos-dir=/home/jhu/Trilinos/development-branch/Trilinos --comm=serial --build-dir=/home/jhu/Trilinos/development-branch/sandbox-mpi --category=2d_Poisson --output-dir=/home/jhu/Trilinos/development-branch/sandbox-mpi/packages/ml/test # #parallel, 3d_Poisson # ~/Trilinos/development-branch/Trilinos/commonTools/test/utilities/runtests --trilinos-dir=/home/jhu/Trilinos/development-branch/Trilinos --comm=mpi --build-dir=/home/jhu/Trilinos/development-branch/sandbox-mpi --category=3d_Poisson_parallel --output-dir=/home/jhu/Trilinos/development-branch/sandbox-mpi/packages/ml/test