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‎.github/conda-env/test-env.yml‎

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name: test-env
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channels:
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- conda-forge
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dependencies:
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- conda-build
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- conda-verify
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- pip
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# always build against NETLIB ('Generic') LAPACK/Blas
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# https://conda-forge.org/docs/maintainer/knowledge_base.html#blas
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- libblas * *netlib
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- libcblas * *netlib
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- liblapack * *netlib
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- numpy
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- scipy
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- matplotlib
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- pytest-cov
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- coverage

‎.github/workflows/test.yml‎

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name: Tests
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on:
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push:
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pull_request:
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paths-ignore:
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- 'README.rst'
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jobs:
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test:
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name: Py${{ matrix.python }}, ${{ matrix.os }}, ${{ matrix.distribution }}, ${{matrix.bla_vendor}} BLA_VENDOR
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runs-on: ${{ matrix.os }}-latest
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strategy:
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fail-fast: false
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matrix:
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os: ['ubuntu', 'windows', 'macos']
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python: [ '3.9' ]
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distribution: [ 'pip', 'conda' ]
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bla_vendor: [ 'Generic', 'OpenBLAS', 'unset' ]
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exclude:
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- os: 'windows'
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distribution: 'pip'
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include:
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- os: 'ubuntu'
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python: '3.6'
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distribution: 'conda'
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bla_vendor: 'Generic'
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- os: "ubuntu"
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python: '3.7'
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distribution: 'conda'
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bla_vendor: 'Generic'
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- os: "ubuntu"
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python: '3.9'
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distribution: 'conda'
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bla_vendor: 'Intel10_64lp'
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- os: 'macos'
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python: '3.9'
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distribution: pip
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bla_vendor: "Apple"
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defaults:
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run:
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shell: bash -l {0}
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steps:
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- name: Checkout Slycot
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uses: actions/checkout@v2
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with:
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path: ./Slycot
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fetch-depth: 0
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- name: Set up Python
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python }}
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- name: Install Ubuntu packages
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if: matrix.os == 'ubuntu' && matrix.distribution == 'pip'
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run: |
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set -xe
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sudo apt-get -y update
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sudo apt-get -y upgrade --fix-missing
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sudo apt-get -y install gfortran cmake
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case ${{ matrix.bla_vendor }} in
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unset | Generic ) sudo apt-get -y install libblas-dev liblapack-dev ;;
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OpenBLAS ) sudo apt-get -y install libopenblas-dev ;;
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*)
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echo "bla_vendor option ${{ matrix.bla_vendor }} not supported"
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exit 1 ;;
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esac
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echo 'CMAKE_GENERATOR=Unix Makefiles' >> $GITHUB_ENV
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- name: Setup macOS
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if: matrix.os == 'macos'
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run: |
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set -xe
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# still point to python2 on current macOS
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ln -sf $(which python3) /usr/local/bin/python
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ln -sf $(which pip3) /usr/local/bin/pip
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if [[ ${{ matrix.distribution }} == "pip" ]]; then
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case ${{ matrix.bla_vendor }} in
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unset | Generic | Apple ) ;; # Found in system
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OpenBLAS )
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brew install openblas
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echo "BLAS_ROOT=/usr/local/opt/openblas/" >> $GITHUB_ENV
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echo "LAPACK_ROOT=/usr/local/opt/openblas/" >> $GITHUB_ENV
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;;
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*)
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echo "bla_vendor option ${{ matrix.bla_vendor }} not supported"
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exit 1 ;;
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esac
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echo 'CMAKE_GENERATOR=Unix Makefiles' >> $GITHUB_ENV
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echo "FC=gfortran-10" >> $GITHUB_ENV
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fi
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- name: Setup Conda
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uses: conda-incubator/setup-miniconda@v2
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if: matrix.distribution == 'conda'
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with:
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channels: conda-forge
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auto-update-conda: true
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python-version: ${{ matrix.python }}
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activate-environment: test-env
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environment-file: ./Slycot/.github/conda-env/test-env.yml
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auto-activate-base: false
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- name: Conda build and install
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working-directory: ./Slycot
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if: matrix.distribution == 'conda'
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run: |
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echo "::group::conda build"
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set -e
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numpyversion=$(python -c 'import numpy; print(numpy.version.version)')
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conda-build --python "${{ matrix.python }}" --numpy $numpyversion conda-recipe
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echo "::endgroup::"
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echo "::group::conda install"
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# always conda build against reference NETLIB, but test against specific LAPACK/BLAS implementations
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case ${{ matrix.bla_vendor }} in
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unset ) # update will reinstall the conda default (os dependent)
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conda update --all
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;;
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Generic ) # stay on netlib
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echo "libblas * *netlib" >> $CONDA_PREFIX/conda-meta/pinned
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;;
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OpenBLAS )
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conda install 'libblas=*=*openblas'
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echo "libblas * *openblas" >> $CONDA_PREFIX/conda-meta/pinned
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;;
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Intel10_64lp )
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conda install 'libblas=*=*mkl'
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echo "libblas * *mkl" >> $CONDA_PREFIX/conda-meta/pinned
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;;
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* )
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echo "bla_vendor option ${{ matrix.bla_vendor }} not supported"
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exit 1 ;;
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esac
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slycot_pkg=$(find $CONDA_PREFIX -name 'slycot*.tar.bz2')
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if [[ ${{ matrix.os }} == 'windows' ]]; then conda install libflang; fi
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conda install --use-local $slycot_pkg
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echo "::endgroup::"
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echo "::group::conda env info"
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conda list
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echo "::endgroup::"
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- name: PIP build and install
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if: matrix.distribution == 'pip'
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working-directory: ./Slycot
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env:
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BLA_VENDOR: ${{ matrix.bla_vendor }}
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run: |
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set -xe
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if [ $BLA_VENDOR = "unset" ]; then unset BLA_VENDOR; fi
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python -m pip install --upgrade pip
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pip install scikit-build matplotlib scipy pytest pytest-cov
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pip install -v .
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pip show slycot
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- name: Slycot unit tests
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run: |
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set -xe
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mkdir slycot-coverage
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pushd slycot-coverage
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slycot_dir=$(python -c "import slycot; print(slycot.__path__[0])")
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echo " $slycot_dir" >> ../Slycot/.coveragerc
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echo "slycot_dir=$slycot_dir" >> $GITHUB_ENV
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pytest --pyargs slycot -v --cov=$slycot_dir --cov-config=../Slycot/.coveragerc
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# also test the .test() function. (no extra coverage)
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python -c 'import slycot; slycot.test()'
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popd
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- name: Checkout python-control
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uses: actions/checkout@v2
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with:
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repository: 'python-control/python-control'
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path: ./python-control
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- name: python-control unit tests
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working-directory: ./python-control
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run: |
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set -xe
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if [[ "${{ matrix.os }}" == "ubuntu" ]]; then
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if [[ "${{ matrix.distribtion}}" == "conda" ]]; then
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conda install pytest-xvfb
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else
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pip install pytest-xvfb
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fi
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fi
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# test_root_locus_zoom, test_sisotool: problems with the toolbar for MPL backends, not relevant to Slycot
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pytest -v \
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--cov=$slycot_dir --cov-config=../Slycot/.coveragerc \
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-k "not (test_root_locus_zoom or test_sisotool)" \
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control/tests
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- name: Combine coverage
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working-directory: ./Slycot
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
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COVERALLS_PARALLEL: true
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run: |
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set -xe
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cp ../slycot-coverage/.coverage .coverage.slycot
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cp ../python-control/.coverage .coverage.control
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coverage combine
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coverage report
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pip install coveralls
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coveralls
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coveralls-final:
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needs: test
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runs-on: ubuntu-latest
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steps:
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- name: Coveralls Finished
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uses: coverallsapp/github-action@master
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with:
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github-token: ${{ secrets.GITHUB_TOKEN }}
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parallel-finished: true

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