HRRR : Failed to get CRS from crs variable LambertConfor mal_Projection

import psyplot.project
import matplotlib.pyplot as plt

n1 = 'GFS/Global_onedeg'
# n1 = 'HRRR/CONUS_2p5km' # XXX psy_maps/plotters.py:309: UserWarning: Failed to get CRS from crs variable LambertConformal_Projection
#n1 = 'NAM/Polar_90km' # XXX psy_maps/plotters.py:309: UserWarning: Failed to get CRS from crs variable PolarStereographic_Projection
nwp0 = f'https://thredds.ucar.edu/thredds/dodsC/grib/NCEP/{n1}/Best'

map0 = psyplot.project.plot.mapplot(nwp0,
    name = 'Geopotential_height_isobaric',
    clabel='{desc}', title = n1 + ' %FT%H:%M'
)
map0.update(z=500, method='nearest') # XXX KeyError: 'Unknown formatoption keyword lev! Possible similiar frasings are levels.'
map0.update(t = '2021-10-02', method='nearest') # XXX KeyError: 'Unknown formatoption keyword time! Possible similiar frasings are title.'

plt.show()

n0 = 'u-component_of_wind_isobaric'
vectors = psyplot.project.plot.mapvector(nwp0, name=[[n0, n0.replace('u-', 'v-')]])
plt.show()

Problem description

First off : cool software !

However, I've noticed some technical difficulties :

The first plot (w/ GFS) works fine, but if you uncomment the "n1 = 'HRRR/CONUS_2p5km'", it gives a warning :

psy_maps/plotters.py:309: UserWarning: Failed to get CRS from crs variable LambertConformal_Projection

... and then kind of hangs.

The plot.mapvector call dies (after some time) w/ RuntimeError: NetCDF: Access failure
The calls to select time & level don't seem to work. RFE : some way to put the "level" info in the title.
From the command line :

psyplot https://thredds.ucar.edu/thredds/dodsC/grib/NCEP/GFS/Global_onedeg/Best -n Pressure_reduced_to_MSL_msl

... seems like it should work, but I get : AttributeError: 'NoneType' object has no attribute 'variables'

FYI, this is on Fedora 34.

Output of `psyplot -aV`

Details

psy_maps.plugin: requirements: cartopy: 0.19.0 version: 1.4.0 psy_simple.plugin: version: 1.4.0 psyplot: requirements: matplotlib: 3.4.3 numpy: 1.20.1 pandas: 1.2.5 python: 3.9.7 (default, Aug 30 2021, 00:00:00) [GCC 11.2.1 20210728 (Red Hat 11.2.1-1)] xarray: 0.17.0 version: 1.4.0

@captcha1

hey @captcha1!

thanks for reporting! I'll have a closer look at it but already found one issue that at least should solve the update problem with map0.update(z=500, method='nearest') (see #39).

Is it an option that you update your xarray to 0.19? I see that you are still using 0.17. I get different error messages, that's why...

map0.update(t = '2021-10-02', method='nearest')

This one is a bit tricky and I am not sure, whether psyplot should really interfer... You have 8 time-stamps on 2021-10-02 and apparently xarray takes all if you do a ds["Geopotential_height_isobaric"].sel(time='2021-10-02', method='nearest')

see here

In [8]: ds["Geopotential_height_isobaric"].sel(time='2021-10-02', method='nearest')
Out[8]: 
<xarray.DataArray 'Geopotential_height_isobaric' (time: 8, isobaric1: 41, lat: 181, lon: 360)>
[21372480 values with dtype=float32]
Coordinates:
  * lat                (lat) float32 90.0 89.0 88.0 87.0 ... -88.0 -89.0 -90.0
  * lon                (lon) float32 0.0 1.0 2.0 3.0 ... 356.0 357.0 358.0 359.0
  * time               (time) datetime64[ns] 2021-10-02 ... 2021-10-02T21:00:00
    reftime            (time) datetime64[ns] ...
  * isobaric1          (isobaric1) float32 1.0 2.0 4.0 ... 9.75e+04 1e+05
    LatLon_Projection  int32 0
Attributes:
    long_name:                      Geopotential height @ Isobaric surface
    units:                          gpm
    abbreviation:                   HGT
    grid_mapping:                   LatLon_Projection
    Grib_Variable_Id:               VAR_0-3-5_L100
    Grib2_Parameter:                [0 3 5]
    Grib2_Parameter_Discipline:     Meteorological products
    Grib2_Parameter_Category:       Mass
    Grib2_Parameter_Name:           Geopotential height
    Grib2_Level_Type:               100
    Grib2_Level_Desc:               Isobaric surface
    Grib2_Generating_Process_Type:  Forecast

So maybe you should use map0.update(t = '2021-10-02T00:00:00', method='nearest')

vectors = psyplot.project.plot.mapvector(nwp0, name=[[n0, n0.replace('u-', 'v-')]])

No idea about this one. It looks like it wants to download the entire netCDF file because I am getting the following message:

oc_open: server error retrieving url: code=403 message="Request too big=3964.59504 Mbytes, max=500.0"

So something is going wrong here because the entire data should not be loaded, only what is needed for visualization. I'll need to have a look.

I'll also have a look into the other files and keep you posted.

Great !

FYI, HRRR mapplot works OK direct from nomads (mapvector slow (ok w/ sref)) :

import psyplot.project
import matplotlib.pyplot as plt
import datetime

nwp0 = 'sref_bc/sref%Y%m%d/srefbc_arw_p1_03z' ; f0 = 'prmslmsl' ; n0 = 'ugrd500mb' # XXX hack : p1 & 03z hardcoded
nwp0 = 'gfs_1p00/gfs%Y%m%d/gfs_1p00_%Hz' ; f0 = 'prmslmsl' ; n0 = 'ugrdprs'
nwp0 = 'hrrr/hrrr%Y%m%d/hrrr_sfc.t%Hz' ; f0 = 'mslmamsl' ; n0 = 'ugrdprs'

dt0 = datetime.datetime(2021, 10, 15)
ds0 = psyplot.data.open_dataset(dt0.strftime('https://nomads.ncep.noaa.gov/dods/' + nwp0))

map0 = ds0.psy.plot.mapplot(name = f0, clabel='{desc}', title = nwp0.split('/')[0] + ' %FT%H:%M')
plt.show()

vectors = ds0.psy.plot.mapvector(name=[[n0, n0.replace('u', 'v')]],
    plot='stream', color='absolute',
    clabel='{desc}', title = nwp0.split('/')[0] + ' %FT%H:%M'
)
plt.show()

FYI, apparently thredds.ucar.edu gets it's data from nomads via NOAAPORT (satellite broadcast).

I'll also have a look into the other files and keep you posted.

alright, seems the current implementation in psy-maps assumed the false_easting and false_northing attributes for the grid mapping are mandatory. They are now made optional in psyplot/psy-maps#41

thanks for reporting! I'll have a closer look at it but already found one issue that at least should solve the update problem with map0.update(z=500, method='nearest') (see #39).

Is it an option that you update your xarray to 0.19? I see that you are still using 0.17. I get different error messages, that's why...

map0.update(t = '2021-10-02', method='nearest')

This one is a bit tricky and I am not sure, whether psyplot should really interfer... You have 8 time-stamps on 2021-10-02 and apparently xarray takes all if you do a ds["Geopotential_height_isobaric"].sel(time='2021-10-02', method='nearest')

see here
So maybe you should use map0.update(t = '2021-10-02T00:00:00', method='nearest')

I used a datetime object and that seems to work better.

I installed xarray to 0.19, but got the same symptom. It seems to work fine w/ the nomads.ncep.noaa.gov data source. The thredds.ucar.edu data source has a lot of extra coordinates, eg : time1, time2, isobaric1, etc. That said, thredds.ucar.edu works with MetPy.

Also, mapvector works OK w/ the nomads sref data (takes about 10 seconds to plot), but it's slow w/ gfs (5 minues) & hrrr.

Also, mapvector works OK w/ the nomads sref data (takes about 10 seconds to plot), but it's slow w/ gfs (5 minues) & hrrr.

Sure! I already found the cause but need a few minutes to fix it (it's weekend 😉).

@captcha1

hey @captcha1! Apologies for the delay. I fixed everything (I suppose) and it would be great if you could quickly test it. Just use the fix/38 branch of psyplot and psy-maps.

To do this, update your local installation from github (pip install -U git+https://github.com/psyplot/psyplot.git@fix/38 git+https://github.com/psyplot/psy-maps.git@fix/38) and please rerun you script with all the datasets that you mentioned above

Thanks for your quick fix !

The "ucar hrrr" data (ei : https://thredds.ucar.edu/thredds/dodsC/grib/NCEP/HRRR/CONUS_2p5km/Best ) doesn't error out, but has the wrong plot : the latitude goes from 25.003 to 25.03 and longitude goes from 95.01 to 94.99.

hmm, ok. Thanks for the feedback! The cartopy projection assumes coordinates to be in meter, whereas your coordinates are in units of km. That is why. I need to transform this

@captcha1

alright @captcha1! I added a fix with psyplot/psy-maps@37121cf and it seems to work. But it would be great if you could verify once more. Just update psy-maps via pip install -U git+https://github.com/psyplot/psy-maps.git@fix/38

Thanks a lot for your patience =)

I added a fix with psyplot/psy-maps@37121cf and it seems to work.

but thinking about it, the solution there is not bulletproof. It does not take bounds into account and it cannot be used for unstructured grids, for instance. So it's probably better to generalize the conversion handling that I already implemented for radians

https://github.com/psyplot/psy-simple/blob/ac305c052b6bc9da47465ee1f35a1c64e489aca6/psy_simple/plotters.py#L126-L143

I can take care of that tomorrow

@captcha1

hey @captcha1! I did implement the fix now (apologies for the delay). Could you please verify that it works by running

pip install -U git+https://github.com/psyplot/psy-maps.git@fix/38 git+https://github.com/psyplot/psyplot.git@fix/38 git+https://github.com/psyplot/psy-simple.git@fix/38

and testing your script above? Then I'll merge the three PRs #39, psyplot/psy-simple#30 and psyplot/psy-maps#41 and close this issue

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HRRR : Failed to get CRS from crs variable LambertConfor mal_Projection #38

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HRRR : Failed to get CRS from crs variable LambertConfor mal_Projection #38

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Chilipp commented on Oct 15, 2021

captcha1 commented on Oct 15, 2021

Chilipp commented on Oct 15, 2021

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Chilipp commented on Oct 16, 2021

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